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cts n 2 supplement  (Thermo Fisher)


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    Structured Review

    Thermo Fisher cts n 2 supplement
    Cts N 2 Supplement, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/n-+2+supplement/Casein/pmc12796728-36-0-4
    Average 96 stars, based on 1 article reviews
    cts n 2 supplement - by Bioz Stars, 2026-10
    96/100 stars

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    Related Articles

    Recombinant:

    Article Title: GM-CSF is key in the efficacy of vaccine-induced reduction of Helicobacter pylori infection.
    Article Snippet: 2.11 | AKP cells co- culture with H. pylori AKP cells were cultured in collagen type I solution from rat tail (Sigma) pre- coated T flasks (Falcon) in Minigut medium composed of DMEM/ F12 (Gibco), 1% Penicillin/streptomycin, 1% N- 2 supplement (Gibco), 1% B- 27 supplement (Gibco), 10% FBS in a 37°C – 5% CO2 incubator.

    Article Title: Modulation of human dorsal root ganglion neuron firing by the Nav1.8 inhibitor suzetrigine.
    Article Snippet: Each well was then gently flooded with 1 mL of culture media consisting of BrainPhys media (Stemcell technologies, Cat. 05709), 1% penicillin/streptomycin, 1% GlutaMAX, 2% NeuroCult SM1 (Stemcell technologies, Cat 05711), 1% N- 2 Supplement (Thermo Scientific, Cat # 17502048), and 2% Fetal Bovine Serum.

    Article Title: Pharmacologically inducing regenerative cardiac cells by small molecule drugs
    Article Snippet: When the CMs recovered contraction, the culture medium was changed with chemically reprogramming medium (MCDB131 Gibco), 25 mg/l NaHCO3 (Sigma), 4 mM Glucose (Sigma), 1% Clutmine (Gibco), 1× N- 2 supplement (Gibco), and 20% 1× B- 27 supplement (Gibco), 10 μM CHIR99021 (Selleck), and 0.5 μM A- 485 (MCE).

    Article Title: Variant-specific effects of GBA1 mutations on dopaminergic neuron proteostasis.
    Article Snippet: Then, the media was changed to N2B27 neuronal cell culture medium composed of 49% Neurobasal medium (Life Technologies), 49% DMEM/F12 (Life Technologies), 1% Glutamax (Life Technologies), 1% penicillin–streptomycin (Capricorn), 1:100 B- 27 supplement (Thermo Fisher Scientific), and 1:200 N- 2 supplement (Thermo Fisher Scientific), with the addition of 150 μM ascorbic acid (Sigma- Aldrich).

    Article Title: High levels of chromosomal instability facilitate the tumor growth and sphere formation.
    Article Snippet: The HeLa Kyoto cell line is a popular subline of HeLa cells, a human cervical carcinoma- derived cell line, which is suitable for mitotic study due to its slow migration.24 In spheroid culture, cells were seeded to round- bottomed ultra- low attachment 96- well plates (Corning) at 1000 cells/well in renal epithelial cell growth basal medium (REBM) without FBS, and supplemented with B- 27 Supplement (Thermo Fisher Scientific), N- 2 Supplement (Thermo Fisher Scientific), and 10 μM ROCK inhibitor Y- 27632 (FUJIFILM Wako).

    Article Title: Assembly of neuron- and radial glial-cell-derived extracellular matrix molecules promotes radial migration of developing cortical neurons
    Article Snippet: DOI: https://doi.org/10.7554/eLife.92342 21 of 32 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Peptide, recombinant protein Recombinant Human Neurocan Protein R&D 6508- NC- 050 Peptide, recombinant protein Chondroitinase ABC Protease Free Seikagaku Corporation 100332 Commercial assay or kit BCA assay kit Thermo Fisher 23227 Commercial assay or kit RNeasy Mini Kit Qiagen 74104 Commercial assay or kit PowerUp SYBR Green Master Mix Thermo Fisher A25741 Commercial assay or kit DIG RNA Labeling Kit (SP6/T7) Roche 11175025910 Commercial assay or kit NEBuilder HiFi DNA Assembly Master Mix New England Biolabs E2621 Commercial assay or kit In- Fusion HD Cloning Kit Takara 639648 Commercial assay or kit KOD -Plus- Mutagenesis Kit Toyobo SMK- 101 Software, algorithm MASCOT server Matrix science https://www. matrixscience.com/server. html RRID:SCR_014322 Software, algorithm ImageJ Schneider et al., 2012 https://imagej.nih.gov/ij/ Other DAPI solution DOJINDO Lot.PF082 340–07971 Other N- 2 Supplement Thermo Fisher 17502–048 Other B- 27 Supplement Thermo Fisher 17504–044 Other Neurobasal Medium Thermo Fisher 21103–049 Other Penicillin- Streptomycin Thermo Fisher 15070–063 Other HBSS (X10) Thermo Fisher 14185–052 Other HEPES (1 M) Thermo Fisher 15630–080 Other Papain Worthington Biochemical Corporation LK003178 Other Fast Green Wako 061–00031 Other Protease Inhibitor Cocktail Sigma P8340- 1ML Other Streptavidin Magnetic Beads Thermo Fisher 88817 Other Poly- L- Ornithine Solution Wako 163–27421 Other Skim Milk Powder Wako 190–12865 Other Immobilon Transfer Membrane PVDF Millipore IPVH00010 Other Immobilon Western Chemiluminescent Millipore WBKLS0500 Other Sodium Hyaluronate (M2) (Mw:600,000~1,120,000) PG Research NaHA- M2 Other Biotinylated Sodium Hyaluronate (M1) (Mw:600,000~1,120,000) PG Research BHHA- M1 Other Carboxyfluorescein diacetate succinimidyl ester DOJINDO 341–07401 Other GFP- Trap- Agarose Chromotek gta- 20 Other ELISA 96 well plate IWAKI 3801–096 Other BLOCK ACE Powder KAC UKB80 Other ELISA POD Substrate TMB Solution Nacalai 05299–54 Continued Continued on next page Mubuchi et al. eLife 2023;12:RP92342.

    Article Title: Electrically Conductive Injectable Silk/PEDOT: PSS Hydrogel for Enhanced Neural Network Formation.
    Article Snippet: The majority of cell culture reagents including neurobasal medium, DMEM/F- 12, fetal bovine serum (FBS), N- 2 supplement, MEM nonessential amino acids (NEAA), β- mercaptoethanol, B- 27 supplement, GlutaMAX, and penicillin–streptomycin (Pen- Strep) were acquired from Thermo Fisher Scientific.

    Article Title: A synthetic method to assay polycystin channel biophysics
    Article Snippet: Cells were centrifuged at 300 × g for 4 min and plated on polylysine- coated glass coverslip at 1–4 × 105 density in basal medium eagle solution containing B27 supplement (17504044, Gibco), N- 2 supplement (17502048, Gibco), 0.5% penicillin/streptomycin (15140148, Gibco), 5% fetal bovine serum, 5% horse serum (260500,Gibco), and GlutaMax (350500, Gibco).

    BIA-KA:

    Article Title: GM-CSF is key in the efficacy of vaccine-induced reduction of Helicobacter pylori infection.
    Article Snippet: 2.11 | AKP cells co- culture with H. pylori AKP cells were cultured in collagen type I solution from rat tail (Sigma) pre- coated T flasks (Falcon) in Minigut medium composed of DMEM/ F12 (Gibco), 1% Penicillin/streptomycin, 1% N- 2 supplement (Gibco), 1% B- 27 supplement (Gibco), 10% FBS in a 37°C – 5% CO2 incubator.

    Article Title: Modulation of human dorsal root ganglion neuron firing by the Nav1.8 inhibitor suzetrigine.
    Article Snippet: Each well was then gently flooded with 1 mL of culture media consisting of BrainPhys media (Stemcell technologies, Cat. 05709), 1% penicillin/streptomycin, 1% GlutaMAX, 2% NeuroCult SM1 (Stemcell technologies, Cat 05711), 1% N- 2 Supplement (Thermo Scientific, Cat # 17502048), and 2% Fetal Bovine Serum.

    Article Title: Pharmacologically inducing regenerative cardiac cells by small molecule drugs
    Article Snippet: When the CMs recovered contraction, the culture medium was changed with chemically reprogramming medium (MCDB131 Gibco), 25 mg/l NaHCO3 (Sigma), 4 mM Glucose (Sigma), 1% Clutmine (Gibco), 1× N- 2 supplement (Gibco), and 20% 1× B- 27 supplement (Gibco), 10 μM CHIR99021 (Selleck), and 0.5 μM A- 485 (MCE).

    Article Title: Variant-specific effects of GBA1 mutations on dopaminergic neuron proteostasis.
    Article Snippet: Then, the media was changed to N2B27 neuronal cell culture medium composed of 49% Neurobasal medium (Life Technologies), 49% DMEM/F12 (Life Technologies), 1% Glutamax (Life Technologies), 1% penicillin–streptomycin (Capricorn), 1:100 B- 27 supplement (Thermo Fisher Scientific), and 1:200 N- 2 supplement (Thermo Fisher Scientific), with the addition of 150 μM ascorbic acid (Sigma- Aldrich).

    Article Title: High levels of chromosomal instability facilitate the tumor growth and sphere formation.
    Article Snippet: The HeLa Kyoto cell line is a popular subline of HeLa cells, a human cervical carcinoma- derived cell line, which is suitable for mitotic study due to its slow migration.24 In spheroid culture, cells were seeded to round- bottomed ultra- low attachment 96- well plates (Corning) at 1000 cells/well in renal epithelial cell growth basal medium (REBM) without FBS, and supplemented with B- 27 Supplement (Thermo Fisher Scientific), N- 2 Supplement (Thermo Fisher Scientific), and 10 μM ROCK inhibitor Y- 27632 (FUJIFILM Wako).

    Article Title: Assembly of neuron- and radial glial-cell-derived extracellular matrix molecules promotes radial migration of developing cortical neurons
    Article Snippet: DOI: https://doi.org/10.7554/eLife.92342 21 of 32 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Peptide, recombinant protein Recombinant Human Neurocan Protein R&D 6508- NC- 050 Peptide, recombinant protein Chondroitinase ABC Protease Free Seikagaku Corporation 100332 Commercial assay or kit BCA assay kit Thermo Fisher 23227 Commercial assay or kit RNeasy Mini Kit Qiagen 74104 Commercial assay or kit PowerUp SYBR Green Master Mix Thermo Fisher A25741 Commercial assay or kit DIG RNA Labeling Kit (SP6/T7) Roche 11175025910 Commercial assay or kit NEBuilder HiFi DNA Assembly Master Mix New England Biolabs E2621 Commercial assay or kit In- Fusion HD Cloning Kit Takara 639648 Commercial assay or kit KOD -Plus- Mutagenesis Kit Toyobo SMK- 101 Software, algorithm MASCOT server Matrix science https://www. matrixscience.com/server. html RRID:SCR_014322 Software, algorithm ImageJ Schneider et al., 2012 https://imagej.nih.gov/ij/ Other DAPI solution DOJINDO Lot.PF082 340–07971 Other N- 2 Supplement Thermo Fisher 17502–048 Other B- 27 Supplement Thermo Fisher 17504–044 Other Neurobasal Medium Thermo Fisher 21103–049 Other Penicillin- Streptomycin Thermo Fisher 15070–063 Other HBSS (X10) Thermo Fisher 14185–052 Other HEPES (1 M) Thermo Fisher 15630–080 Other Papain Worthington Biochemical Corporation LK003178 Other Fast Green Wako 061–00031 Other Protease Inhibitor Cocktail Sigma P8340- 1ML Other Streptavidin Magnetic Beads Thermo Fisher 88817 Other Poly- L- Ornithine Solution Wako 163–27421 Other Skim Milk Powder Wako 190–12865 Other Immobilon Transfer Membrane PVDF Millipore IPVH00010 Other Immobilon Western Chemiluminescent Millipore WBKLS0500 Other Sodium Hyaluronate (M2) (Mw:600,000~1,120,000) PG Research NaHA- M2 Other Biotinylated Sodium Hyaluronate (M1) (Mw:600,000~1,120,000) PG Research BHHA- M1 Other Carboxyfluorescein diacetate succinimidyl ester DOJINDO 341–07401 Other GFP- Trap- Agarose Chromotek gta- 20 Other ELISA 96 well plate IWAKI 3801–096 Other BLOCK ACE Powder KAC UKB80 Other ELISA POD Substrate TMB Solution Nacalai 05299–54 Continued Continued on next page Mubuchi et al. eLife 2023;12:RP92342.

    Article Title: Electrically Conductive Injectable Silk/PEDOT: PSS Hydrogel for Enhanced Neural Network Formation.
    Article Snippet: The majority of cell culture reagents including neurobasal medium, DMEM/F- 12, fetal bovine serum (FBS), N- 2 supplement, MEM nonessential amino acids (NEAA), β- mercaptoethanol, B- 27 supplement, GlutaMAX, and penicillin–streptomycin (Pen- Strep) were acquired from Thermo Fisher Scientific.

    Article Title: A synthetic method to assay polycystin channel biophysics
    Article Snippet: Cells were centrifuged at 300 × g for 4 min and plated on polylysine- coated glass coverslip at 1–4 × 105 density in basal medium eagle solution containing B27 supplement (17504044, Gibco), N- 2 supplement (17502048, Gibco), 0.5% penicillin/streptomycin (15140148, Gibco), 5% fetal bovine serum, 5% horse serum (260500,Gibco), and GlutaMax (350500, Gibco).

    SYBR Green Assay:

    Article Title: GM-CSF is key in the efficacy of vaccine-induced reduction of Helicobacter pylori infection.
    Article Snippet: 2.11 | AKP cells co- culture with H. pylori AKP cells were cultured in collagen type I solution from rat tail (Sigma) pre- coated T flasks (Falcon) in Minigut medium composed of DMEM/ F12 (Gibco), 1% Penicillin/streptomycin, 1% N- 2 supplement (Gibco), 1% B- 27 supplement (Gibco), 10% FBS in a 37°C – 5% CO2 incubator.

    Article Title: Modulation of human dorsal root ganglion neuron firing by the Nav1.8 inhibitor suzetrigine.
    Article Snippet: Each well was then gently flooded with 1 mL of culture media consisting of BrainPhys media (Stemcell technologies, Cat. 05709), 1% penicillin/streptomycin, 1% GlutaMAX, 2% NeuroCult SM1 (Stemcell technologies, Cat 05711), 1% N- 2 Supplement (Thermo Scientific, Cat # 17502048), and 2% Fetal Bovine Serum.

    Article Title: Pharmacologically inducing regenerative cardiac cells by small molecule drugs
    Article Snippet: When the CMs recovered contraction, the culture medium was changed with chemically reprogramming medium (MCDB131 Gibco), 25 mg/l NaHCO3 (Sigma), 4 mM Glucose (Sigma), 1% Clutmine (Gibco), 1× N- 2 supplement (Gibco), and 20% 1× B- 27 supplement (Gibco), 10 μM CHIR99021 (Selleck), and 0.5 μM A- 485 (MCE).

    Article Title: Variant-specific effects of GBA1 mutations on dopaminergic neuron proteostasis.
    Article Snippet: Then, the media was changed to N2B27 neuronal cell culture medium composed of 49% Neurobasal medium (Life Technologies), 49% DMEM/F12 (Life Technologies), 1% Glutamax (Life Technologies), 1% penicillin–streptomycin (Capricorn), 1:100 B- 27 supplement (Thermo Fisher Scientific), and 1:200 N- 2 supplement (Thermo Fisher Scientific), with the addition of 150 μM ascorbic acid (Sigma- Aldrich).

    Article Title: High levels of chromosomal instability facilitate the tumor growth and sphere formation.
    Article Snippet: The HeLa Kyoto cell line is a popular subline of HeLa cells, a human cervical carcinoma- derived cell line, which is suitable for mitotic study due to its slow migration.24 In spheroid culture, cells were seeded to round- bottomed ultra- low attachment 96- well plates (Corning) at 1000 cells/well in renal epithelial cell growth basal medium (REBM) without FBS, and supplemented with B- 27 Supplement (Thermo Fisher Scientific), N- 2 Supplement (Thermo Fisher Scientific), and 10 μM ROCK inhibitor Y- 27632 (FUJIFILM Wako).

    Article Title: Assembly of neuron- and radial glial-cell-derived extracellular matrix molecules promotes radial migration of developing cortical neurons
    Article Snippet: DOI: https://doi.org/10.7554/eLife.92342 21 of 32 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Peptide, recombinant protein Recombinant Human Neurocan Protein R&D 6508- NC- 050 Peptide, recombinant protein Chondroitinase ABC Protease Free Seikagaku Corporation 100332 Commercial assay or kit BCA assay kit Thermo Fisher 23227 Commercial assay or kit RNeasy Mini Kit Qiagen 74104 Commercial assay or kit PowerUp SYBR Green Master Mix Thermo Fisher A25741 Commercial assay or kit DIG RNA Labeling Kit (SP6/T7) Roche 11175025910 Commercial assay or kit NEBuilder HiFi DNA Assembly Master Mix New England Biolabs E2621 Commercial assay or kit In- Fusion HD Cloning Kit Takara 639648 Commercial assay or kit KOD -Plus- Mutagenesis Kit Toyobo SMK- 101 Software, algorithm MASCOT server Matrix science https://www. matrixscience.com/server. html RRID:SCR_014322 Software, algorithm ImageJ Schneider et al., 2012 https://imagej.nih.gov/ij/ Other DAPI solution DOJINDO Lot.PF082 340–07971 Other N- 2 Supplement Thermo Fisher 17502–048 Other B- 27 Supplement Thermo Fisher 17504–044 Other Neurobasal Medium Thermo Fisher 21103–049 Other Penicillin- Streptomycin Thermo Fisher 15070–063 Other HBSS (X10) Thermo Fisher 14185–052 Other HEPES (1 M) Thermo Fisher 15630–080 Other Papain Worthington Biochemical Corporation LK003178 Other Fast Green Wako 061–00031 Other Protease Inhibitor Cocktail Sigma P8340- 1ML Other Streptavidin Magnetic Beads Thermo Fisher 88817 Other Poly- L- Ornithine Solution Wako 163–27421 Other Skim Milk Powder Wako 190–12865 Other Immobilon Transfer Membrane PVDF Millipore IPVH00010 Other Immobilon Western Chemiluminescent Millipore WBKLS0500 Other Sodium Hyaluronate (M2) (Mw:600,000~1,120,000) PG Research NaHA- M2 Other Biotinylated Sodium Hyaluronate (M1) (Mw:600,000~1,120,000) PG Research BHHA- M1 Other Carboxyfluorescein diacetate succinimidyl ester DOJINDO 341–07401 Other GFP- Trap- Agarose Chromotek gta- 20 Other ELISA 96 well plate IWAKI 3801–096 Other BLOCK ACE Powder KAC UKB80 Other ELISA POD Substrate TMB Solution Nacalai 05299–54 Continued Continued on next page Mubuchi et al. eLife 2023;12:RP92342.

    Article Title: Electrically Conductive Injectable Silk/PEDOT: PSS Hydrogel for Enhanced Neural Network Formation.
    Article Snippet: The majority of cell culture reagents including neurobasal medium, DMEM/F- 12, fetal bovine serum (FBS), N- 2 supplement, MEM nonessential amino acids (NEAA), β- mercaptoethanol, B- 27 supplement, GlutaMAX, and penicillin–streptomycin (Pen- Strep) were acquired from Thermo Fisher Scientific.

    Article Title: A synthetic method to assay polycystin channel biophysics
    Article Snippet: Cells were centrifuged at 300 × g for 4 min and plated on polylysine- coated glass coverslip at 1–4 × 105 density in basal medium eagle solution containing B27 supplement (17504044, Gibco), N- 2 supplement (17502048, Gibco), 0.5% penicillin/streptomycin (15140148, Gibco), 5% fetal bovine serum, 5% horse serum (260500,Gibco), and GlutaMax (350500, Gibco).

    Labeling:

    Article Title: GM-CSF is key in the efficacy of vaccine-induced reduction of Helicobacter pylori infection.
    Article Snippet: 2.11 | AKP cells co- culture with H. pylori AKP cells were cultured in collagen type I solution from rat tail (Sigma) pre- coated T flasks (Falcon) in Minigut medium composed of DMEM/ F12 (Gibco), 1% Penicillin/streptomycin, 1% N- 2 supplement (Gibco), 1% B- 27 supplement (Gibco), 10% FBS in a 37°C – 5% CO2 incubator.

    Article Title: Modulation of human dorsal root ganglion neuron firing by the Nav1.8 inhibitor suzetrigine.
    Article Snippet: Each well was then gently flooded with 1 mL of culture media consisting of BrainPhys media (Stemcell technologies, Cat. 05709), 1% penicillin/streptomycin, 1% GlutaMAX, 2% NeuroCult SM1 (Stemcell technologies, Cat 05711), 1% N- 2 Supplement (Thermo Scientific, Cat # 17502048), and 2% Fetal Bovine Serum.

    Article Title: Pharmacologically inducing regenerative cardiac cells by small molecule drugs
    Article Snippet: When the CMs recovered contraction, the culture medium was changed with chemically reprogramming medium (MCDB131 Gibco), 25 mg/l NaHCO3 (Sigma), 4 mM Glucose (Sigma), 1% Clutmine (Gibco), 1× N- 2 supplement (Gibco), and 20% 1× B- 27 supplement (Gibco), 10 μM CHIR99021 (Selleck), and 0.5 μM A- 485 (MCE).

    Article Title: Variant-specific effects of GBA1 mutations on dopaminergic neuron proteostasis.
    Article Snippet: Then, the media was changed to N2B27 neuronal cell culture medium composed of 49% Neurobasal medium (Life Technologies), 49% DMEM/F12 (Life Technologies), 1% Glutamax (Life Technologies), 1% penicillin–streptomycin (Capricorn), 1:100 B- 27 supplement (Thermo Fisher Scientific), and 1:200 N- 2 supplement (Thermo Fisher Scientific), with the addition of 150 μM ascorbic acid (Sigma- Aldrich).

    Article Title: High levels of chromosomal instability facilitate the tumor growth and sphere formation.
    Article Snippet: The HeLa Kyoto cell line is a popular subline of HeLa cells, a human cervical carcinoma- derived cell line, which is suitable for mitotic study due to its slow migration.24 In spheroid culture, cells were seeded to round- bottomed ultra- low attachment 96- well plates (Corning) at 1000 cells/well in renal epithelial cell growth basal medium (REBM) without FBS, and supplemented with B- 27 Supplement (Thermo Fisher Scientific), N- 2 Supplement (Thermo Fisher Scientific), and 10 μM ROCK inhibitor Y- 27632 (FUJIFILM Wako).

    Article Title: Assembly of neuron- and radial glial-cell-derived extracellular matrix molecules promotes radial migration of developing cortical neurons
    Article Snippet: DOI: https://doi.org/10.7554/eLife.92342 21 of 32 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Peptide, recombinant protein Recombinant Human Neurocan Protein R&D 6508- NC- 050 Peptide, recombinant protein Chondroitinase ABC Protease Free Seikagaku Corporation 100332 Commercial assay or kit BCA assay kit Thermo Fisher 23227 Commercial assay or kit RNeasy Mini Kit Qiagen 74104 Commercial assay or kit PowerUp SYBR Green Master Mix Thermo Fisher A25741 Commercial assay or kit DIG RNA Labeling Kit (SP6/T7) Roche 11175025910 Commercial assay or kit NEBuilder HiFi DNA Assembly Master Mix New England Biolabs E2621 Commercial assay or kit In- Fusion HD Cloning Kit Takara 639648 Commercial assay or kit KOD -Plus- Mutagenesis Kit Toyobo SMK- 101 Software, algorithm MASCOT server Matrix science https://www. matrixscience.com/server. html RRID:SCR_014322 Software, algorithm ImageJ Schneider et al., 2012 https://imagej.nih.gov/ij/ Other DAPI solution DOJINDO Lot.PF082 340–07971 Other N- 2 Supplement Thermo Fisher 17502–048 Other B- 27 Supplement Thermo Fisher 17504–044 Other Neurobasal Medium Thermo Fisher 21103–049 Other Penicillin- Streptomycin Thermo Fisher 15070–063 Other HBSS (X10) Thermo Fisher 14185–052 Other HEPES (1 M) Thermo Fisher 15630–080 Other Papain Worthington Biochemical Corporation LK003178 Other Fast Green Wako 061–00031 Other Protease Inhibitor Cocktail Sigma P8340- 1ML Other Streptavidin Magnetic Beads Thermo Fisher 88817 Other Poly- L- Ornithine Solution Wako 163–27421 Other Skim Milk Powder Wako 190–12865 Other Immobilon Transfer Membrane PVDF Millipore IPVH00010 Other Immobilon Western Chemiluminescent Millipore WBKLS0500 Other Sodium Hyaluronate (M2) (Mw:600,000~1,120,000) PG Research NaHA- M2 Other Biotinylated Sodium Hyaluronate (M1) (Mw:600,000~1,120,000) PG Research BHHA- M1 Other Carboxyfluorescein diacetate succinimidyl ester DOJINDO 341–07401 Other GFP- Trap- Agarose Chromotek gta- 20 Other ELISA 96 well plate IWAKI 3801–096 Other BLOCK ACE Powder KAC UKB80 Other ELISA POD Substrate TMB Solution Nacalai 05299–54 Continued Continued on next page Mubuchi et al. eLife 2023;12:RP92342.

    Article Title: Electrically Conductive Injectable Silk/PEDOT: PSS Hydrogel for Enhanced Neural Network Formation.
    Article Snippet: The majority of cell culture reagents including neurobasal medium, DMEM/F- 12, fetal bovine serum (FBS), N- 2 supplement, MEM nonessential amino acids (NEAA), β- mercaptoethanol, B- 27 supplement, GlutaMAX, and penicillin–streptomycin (Pen- Strep) were acquired from Thermo Fisher Scientific.

    Article Title: A synthetic method to assay polycystin channel biophysics
    Article Snippet: Cells were centrifuged at 300 × g for 4 min and plated on polylysine- coated glass coverslip at 1–4 × 105 density in basal medium eagle solution containing B27 supplement (17504044, Gibco), N- 2 supplement (17502048, Gibco), 0.5% penicillin/streptomycin (15140148, Gibco), 5% fetal bovine serum, 5% horse serum (260500,Gibco), and GlutaMax (350500, Gibco).

    Cloning:

    Article Title: GM-CSF is key in the efficacy of vaccine-induced reduction of Helicobacter pylori infection.
    Article Snippet: 2.11 | AKP cells co- culture with H. pylori AKP cells were cultured in collagen type I solution from rat tail (Sigma) pre- coated T flasks (Falcon) in Minigut medium composed of DMEM/ F12 (Gibco), 1% Penicillin/streptomycin, 1% N- 2 supplement (Gibco), 1% B- 27 supplement (Gibco), 10% FBS in a 37°C – 5% CO2 incubator.

    Article Title: Modulation of human dorsal root ganglion neuron firing by the Nav1.8 inhibitor suzetrigine.
    Article Snippet: Each well was then gently flooded with 1 mL of culture media consisting of BrainPhys media (Stemcell technologies, Cat. 05709), 1% penicillin/streptomycin, 1% GlutaMAX, 2% NeuroCult SM1 (Stemcell technologies, Cat 05711), 1% N- 2 Supplement (Thermo Scientific, Cat # 17502048), and 2% Fetal Bovine Serum.

    Article Title: Pharmacologically inducing regenerative cardiac cells by small molecule drugs
    Article Snippet: When the CMs recovered contraction, the culture medium was changed with chemically reprogramming medium (MCDB131 Gibco), 25 mg/l NaHCO3 (Sigma), 4 mM Glucose (Sigma), 1% Clutmine (Gibco), 1× N- 2 supplement (Gibco), and 20% 1× B- 27 supplement (Gibco), 10 μM CHIR99021 (Selleck), and 0.5 μM A- 485 (MCE).

    Article Title: Variant-specific effects of GBA1 mutations on dopaminergic neuron proteostasis.
    Article Snippet: Then, the media was changed to N2B27 neuronal cell culture medium composed of 49% Neurobasal medium (Life Technologies), 49% DMEM/F12 (Life Technologies), 1% Glutamax (Life Technologies), 1% penicillin–streptomycin (Capricorn), 1:100 B- 27 supplement (Thermo Fisher Scientific), and 1:200 N- 2 supplement (Thermo Fisher Scientific), with the addition of 150 μM ascorbic acid (Sigma- Aldrich).

    Article Title: High levels of chromosomal instability facilitate the tumor growth and sphere formation.
    Article Snippet: The HeLa Kyoto cell line is a popular subline of HeLa cells, a human cervical carcinoma- derived cell line, which is suitable for mitotic study due to its slow migration.24 In spheroid culture, cells were seeded to round- bottomed ultra- low attachment 96- well plates (Corning) at 1000 cells/well in renal epithelial cell growth basal medium (REBM) without FBS, and supplemented with B- 27 Supplement (Thermo Fisher Scientific), N- 2 Supplement (Thermo Fisher Scientific), and 10 μM ROCK inhibitor Y- 27632 (FUJIFILM Wako).

    Article Title: Assembly of neuron- and radial glial-cell-derived extracellular matrix molecules promotes radial migration of developing cortical neurons
    Article Snippet: DOI: https://doi.org/10.7554/eLife.92342 21 of 32 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Peptide, recombinant protein Recombinant Human Neurocan Protein R&D 6508- NC- 050 Peptide, recombinant protein Chondroitinase ABC Protease Free Seikagaku Corporation 100332 Commercial assay or kit BCA assay kit Thermo Fisher 23227 Commercial assay or kit RNeasy Mini Kit Qiagen 74104 Commercial assay or kit PowerUp SYBR Green Master Mix Thermo Fisher A25741 Commercial assay or kit DIG RNA Labeling Kit (SP6/T7) Roche 11175025910 Commercial assay or kit NEBuilder HiFi DNA Assembly Master Mix New England Biolabs E2621 Commercial assay or kit In- Fusion HD Cloning Kit Takara 639648 Commercial assay or kit KOD -Plus- Mutagenesis Kit Toyobo SMK- 101 Software, algorithm MASCOT server Matrix science https://www. matrixscience.com/server. html RRID:SCR_014322 Software, algorithm ImageJ Schneider et al., 2012 https://imagej.nih.gov/ij/ Other DAPI solution DOJINDO Lot.PF082 340–07971 Other N- 2 Supplement Thermo Fisher 17502–048 Other B- 27 Supplement Thermo Fisher 17504–044 Other Neurobasal Medium Thermo Fisher 21103–049 Other Penicillin- Streptomycin Thermo Fisher 15070–063 Other HBSS (X10) Thermo Fisher 14185–052 Other HEPES (1 M) Thermo Fisher 15630–080 Other Papain Worthington Biochemical Corporation LK003178 Other Fast Green Wako 061–00031 Other Protease Inhibitor Cocktail Sigma P8340- 1ML Other Streptavidin Magnetic Beads Thermo Fisher 88817 Other Poly- L- Ornithine Solution Wako 163–27421 Other Skim Milk Powder Wako 190–12865 Other Immobilon Transfer Membrane PVDF Millipore IPVH00010 Other Immobilon Western Chemiluminescent Millipore WBKLS0500 Other Sodium Hyaluronate (M2) (Mw:600,000~1,120,000) PG Research NaHA- M2 Other Biotinylated Sodium Hyaluronate (M1) (Mw:600,000~1,120,000) PG Research BHHA- M1 Other Carboxyfluorescein diacetate succinimidyl ester DOJINDO 341–07401 Other GFP- Trap- Agarose Chromotek gta- 20 Other ELISA 96 well plate IWAKI 3801–096 Other BLOCK ACE Powder KAC UKB80 Other ELISA POD Substrate TMB Solution Nacalai 05299–54 Continued Continued on next page Mubuchi et al. eLife 2023;12:RP92342.

    Article Title: Electrically Conductive Injectable Silk/PEDOT: PSS Hydrogel for Enhanced Neural Network Formation.
    Article Snippet: The majority of cell culture reagents including neurobasal medium, DMEM/F- 12, fetal bovine serum (FBS), N- 2 supplement, MEM nonessential amino acids (NEAA), β- mercaptoethanol, B- 27 supplement, GlutaMAX, and penicillin–streptomycin (Pen- Strep) were acquired from Thermo Fisher Scientific.

    Article Title: A synthetic method to assay polycystin channel biophysics
    Article Snippet: Cells were centrifuged at 300 × g for 4 min and plated on polylysine- coated glass coverslip at 1–4 × 105 density in basal medium eagle solution containing B27 supplement (17504044, Gibco), N- 2 supplement (17502048, Gibco), 0.5% penicillin/streptomycin (15140148, Gibco), 5% fetal bovine serum, 5% horse serum (260500,Gibco), and GlutaMax (350500, Gibco).

    Mutagenesis:

    Article Title: GM-CSF is key in the efficacy of vaccine-induced reduction of Helicobacter pylori infection.
    Article Snippet: 2.11 | AKP cells co- culture with H. pylori AKP cells were cultured in collagen type I solution from rat tail (Sigma) pre- coated T flasks (Falcon) in Minigut medium composed of DMEM/ F12 (Gibco), 1% Penicillin/streptomycin, 1% N- 2 supplement (Gibco), 1% B- 27 supplement (Gibco), 10% FBS in a 37°C – 5% CO2 incubator.

    Article Title: Modulation of human dorsal root ganglion neuron firing by the Nav1.8 inhibitor suzetrigine.
    Article Snippet: Each well was then gently flooded with 1 mL of culture media consisting of BrainPhys media (Stemcell technologies, Cat. 05709), 1% penicillin/streptomycin, 1% GlutaMAX, 2% NeuroCult SM1 (Stemcell technologies, Cat 05711), 1% N- 2 Supplement (Thermo Scientific, Cat # 17502048), and 2% Fetal Bovine Serum.

    Article Title: Pharmacologically inducing regenerative cardiac cells by small molecule drugs
    Article Snippet: When the CMs recovered contraction, the culture medium was changed with chemically reprogramming medium (MCDB131 Gibco), 25 mg/l NaHCO3 (Sigma), 4 mM Glucose (Sigma), 1% Clutmine (Gibco), 1× N- 2 supplement (Gibco), and 20% 1× B- 27 supplement (Gibco), 10 μM CHIR99021 (Selleck), and 0.5 μM A- 485 (MCE).

    Article Title: Variant-specific effects of GBA1 mutations on dopaminergic neuron proteostasis.
    Article Snippet: Then, the media was changed to N2B27 neuronal cell culture medium composed of 49% Neurobasal medium (Life Technologies), 49% DMEM/F12 (Life Technologies), 1% Glutamax (Life Technologies), 1% penicillin–streptomycin (Capricorn), 1:100 B- 27 supplement (Thermo Fisher Scientific), and 1:200 N- 2 supplement (Thermo Fisher Scientific), with the addition of 150 μM ascorbic acid (Sigma- Aldrich).

    Article Title: High levels of chromosomal instability facilitate the tumor growth and sphere formation.
    Article Snippet: The HeLa Kyoto cell line is a popular subline of HeLa cells, a human cervical carcinoma- derived cell line, which is suitable for mitotic study due to its slow migration.24 In spheroid culture, cells were seeded to round- bottomed ultra- low attachment 96- well plates (Corning) at 1000 cells/well in renal epithelial cell growth basal medium (REBM) without FBS, and supplemented with B- 27 Supplement (Thermo Fisher Scientific), N- 2 Supplement (Thermo Fisher Scientific), and 10 μM ROCK inhibitor Y- 27632 (FUJIFILM Wako).

    Article Title: Assembly of neuron- and radial glial-cell-derived extracellular matrix molecules promotes radial migration of developing cortical neurons
    Article Snippet: DOI: https://doi.org/10.7554/eLife.92342 21 of 32 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Peptide, recombinant protein Recombinant Human Neurocan Protein R&D 6508- NC- 050 Peptide, recombinant protein Chondroitinase ABC Protease Free Seikagaku Corporation 100332 Commercial assay or kit BCA assay kit Thermo Fisher 23227 Commercial assay or kit RNeasy Mini Kit Qiagen 74104 Commercial assay or kit PowerUp SYBR Green Master Mix Thermo Fisher A25741 Commercial assay or kit DIG RNA Labeling Kit (SP6/T7) Roche 11175025910 Commercial assay or kit NEBuilder HiFi DNA Assembly Master Mix New England Biolabs E2621 Commercial assay or kit In- Fusion HD Cloning Kit Takara 639648 Commercial assay or kit KOD -Plus- Mutagenesis Kit Toyobo SMK- 101 Software, algorithm MASCOT server Matrix science https://www. matrixscience.com/server. html RRID:SCR_014322 Software, algorithm ImageJ Schneider et al., 2012 https://imagej.nih.gov/ij/ Other DAPI solution DOJINDO Lot.PF082 340–07971 Other N- 2 Supplement Thermo Fisher 17502–048 Other B- 27 Supplement Thermo Fisher 17504–044 Other Neurobasal Medium Thermo Fisher 21103–049 Other Penicillin- Streptomycin Thermo Fisher 15070–063 Other HBSS (X10) Thermo Fisher 14185–052 Other HEPES (1 M) Thermo Fisher 15630–080 Other Papain Worthington Biochemical Corporation LK003178 Other Fast Green Wako 061–00031 Other Protease Inhibitor Cocktail Sigma P8340- 1ML Other Streptavidin Magnetic Beads Thermo Fisher 88817 Other Poly- L- Ornithine Solution Wako 163–27421 Other Skim Milk Powder Wako 190–12865 Other Immobilon Transfer Membrane PVDF Millipore IPVH00010 Other Immobilon Western Chemiluminescent Millipore WBKLS0500 Other Sodium Hyaluronate (M2) (Mw:600,000~1,120,000) PG Research NaHA- M2 Other Biotinylated Sodium Hyaluronate (M1) (Mw:600,000~1,120,000) PG Research BHHA- M1 Other Carboxyfluorescein diacetate succinimidyl ester DOJINDO 341–07401 Other GFP- Trap- Agarose Chromotek gta- 20 Other ELISA 96 well plate IWAKI 3801–096 Other BLOCK ACE Powder KAC UKB80 Other ELISA POD Substrate TMB Solution Nacalai 05299–54 Continued Continued on next page Mubuchi et al. eLife 2023;12:RP92342.

    Article Title: Electrically Conductive Injectable Silk/PEDOT: PSS Hydrogel for Enhanced Neural Network Formation.
    Article Snippet: The majority of cell culture reagents including neurobasal medium, DMEM/F- 12, fetal bovine serum (FBS), N- 2 supplement, MEM nonessential amino acids (NEAA), β- mercaptoethanol, B- 27 supplement, GlutaMAX, and penicillin–streptomycin (Pen- Strep) were acquired from Thermo Fisher Scientific.

    Article Title: A synthetic method to assay polycystin channel biophysics
    Article Snippet: Cells were centrifuged at 300 × g for 4 min and plated on polylysine- coated glass coverslip at 1–4 × 105 density in basal medium eagle solution containing B27 supplement (17504044, Gibco), N- 2 supplement (17502048, Gibco), 0.5% penicillin/streptomycin (15140148, Gibco), 5% fetal bovine serum, 5% horse serum (260500,Gibco), and GlutaMax (350500, Gibco).

    Software:

    Article Title: GM-CSF is key in the efficacy of vaccine-induced reduction of Helicobacter pylori infection.
    Article Snippet: 2.11 | AKP cells co- culture with H. pylori AKP cells were cultured in collagen type I solution from rat tail (Sigma) pre- coated T flasks (Falcon) in Minigut medium composed of DMEM/ F12 (Gibco), 1% Penicillin/streptomycin, 1% N- 2 supplement (Gibco), 1% B- 27 supplement (Gibco), 10% FBS in a 37°C – 5% CO2 incubator.

    Article Title: Modulation of human dorsal root ganglion neuron firing by the Nav1.8 inhibitor suzetrigine.
    Article Snippet: Each well was then gently flooded with 1 mL of culture media consisting of BrainPhys media (Stemcell technologies, Cat. 05709), 1% penicillin/streptomycin, 1% GlutaMAX, 2% NeuroCult SM1 (Stemcell technologies, Cat 05711), 1% N- 2 Supplement (Thermo Scientific, Cat # 17502048), and 2% Fetal Bovine Serum.

    Article Title: Pharmacologically inducing regenerative cardiac cells by small molecule drugs
    Article Snippet: When the CMs recovered contraction, the culture medium was changed with chemically reprogramming medium (MCDB131 Gibco), 25 mg/l NaHCO3 (Sigma), 4 mM Glucose (Sigma), 1% Clutmine (Gibco), 1× N- 2 supplement (Gibco), and 20% 1× B- 27 supplement (Gibco), 10 μM CHIR99021 (Selleck), and 0.5 μM A- 485 (MCE).

    Article Title: Variant-specific effects of GBA1 mutations on dopaminergic neuron proteostasis.
    Article Snippet: Then, the media was changed to N2B27 neuronal cell culture medium composed of 49% Neurobasal medium (Life Technologies), 49% DMEM/F12 (Life Technologies), 1% Glutamax (Life Technologies), 1% penicillin–streptomycin (Capricorn), 1:100 B- 27 supplement (Thermo Fisher Scientific), and 1:200 N- 2 supplement (Thermo Fisher Scientific), with the addition of 150 μM ascorbic acid (Sigma- Aldrich).

    Article Title: High levels of chromosomal instability facilitate the tumor growth and sphere formation.
    Article Snippet: The HeLa Kyoto cell line is a popular subline of HeLa cells, a human cervical carcinoma- derived cell line, which is suitable for mitotic study due to its slow migration.24 In spheroid culture, cells were seeded to round- bottomed ultra- low attachment 96- well plates (Corning) at 1000 cells/well in renal epithelial cell growth basal medium (REBM) without FBS, and supplemented with B- 27 Supplement (Thermo Fisher Scientific), N- 2 Supplement (Thermo Fisher Scientific), and 10 μM ROCK inhibitor Y- 27632 (FUJIFILM Wako).

    Article Title: Assembly of neuron- and radial glial-cell-derived extracellular matrix molecules promotes radial migration of developing cortical neurons
    Article Snippet: DOI: https://doi.org/10.7554/eLife.92342 21 of 32 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Peptide, recombinant protein Recombinant Human Neurocan Protein R&D 6508- NC- 050 Peptide, recombinant protein Chondroitinase ABC Protease Free Seikagaku Corporation 100332 Commercial assay or kit BCA assay kit Thermo Fisher 23227 Commercial assay or kit RNeasy Mini Kit Qiagen 74104 Commercial assay or kit PowerUp SYBR Green Master Mix Thermo Fisher A25741 Commercial assay or kit DIG RNA Labeling Kit (SP6/T7) Roche 11175025910 Commercial assay or kit NEBuilder HiFi DNA Assembly Master Mix New England Biolabs E2621 Commercial assay or kit In- Fusion HD Cloning Kit Takara 639648 Commercial assay or kit KOD -Plus- Mutagenesis Kit Toyobo SMK- 101 Software, algorithm MASCOT server Matrix science https://www. matrixscience.com/server. html RRID:SCR_014322 Software, algorithm ImageJ Schneider et al., 2012 https://imagej.nih.gov/ij/ Other DAPI solution DOJINDO Lot.PF082 340–07971 Other N- 2 Supplement Thermo Fisher 17502–048 Other B- 27 Supplement Thermo Fisher 17504–044 Other Neurobasal Medium Thermo Fisher 21103–049 Other Penicillin- Streptomycin Thermo Fisher 15070–063 Other HBSS (X10) Thermo Fisher 14185–052 Other HEPES (1 M) Thermo Fisher 15630–080 Other Papain Worthington Biochemical Corporation LK003178 Other Fast Green Wako 061–00031 Other Protease Inhibitor Cocktail Sigma P8340- 1ML Other Streptavidin Magnetic Beads Thermo Fisher 88817 Other Poly- L- Ornithine Solution Wako 163–27421 Other Skim Milk Powder Wako 190–12865 Other Immobilon Transfer Membrane PVDF Millipore IPVH00010 Other Immobilon Western Chemiluminescent Millipore WBKLS0500 Other Sodium Hyaluronate (M2) (Mw:600,000~1,120,000) PG Research NaHA- M2 Other Biotinylated Sodium Hyaluronate (M1) (Mw:600,000~1,120,000) PG Research BHHA- M1 Other Carboxyfluorescein diacetate succinimidyl ester DOJINDO 341–07401 Other GFP- Trap- Agarose Chromotek gta- 20 Other ELISA 96 well plate IWAKI 3801–096 Other BLOCK ACE Powder KAC UKB80 Other ELISA POD Substrate TMB Solution Nacalai 05299–54 Continued Continued on next page Mubuchi et al. eLife 2023;12:RP92342.

    Article Title: Electrically Conductive Injectable Silk/PEDOT: PSS Hydrogel for Enhanced Neural Network Formation.
    Article Snippet: The majority of cell culture reagents including neurobasal medium, DMEM/F- 12, fetal bovine serum (FBS), N- 2 supplement, MEM nonessential amino acids (NEAA), β- mercaptoethanol, B- 27 supplement, GlutaMAX, and penicillin–streptomycin (Pen- Strep) were acquired from Thermo Fisher Scientific.

    Article Title: A synthetic method to assay polycystin channel biophysics
    Article Snippet: Cells were centrifuged at 300 × g for 4 min and plated on polylysine- coated glass coverslip at 1–4 × 105 density in basal medium eagle solution containing B27 supplement (17504044, Gibco), N- 2 supplement (17502048, Gibco), 0.5% penicillin/streptomycin (15140148, Gibco), 5% fetal bovine serum, 5% horse serum (260500,Gibco), and GlutaMax (350500, Gibco).

    Protease Inhibitor:

    Article Title: GM-CSF is key in the efficacy of vaccine-induced reduction of Helicobacter pylori infection.
    Article Snippet: 2.11 | AKP cells co- culture with H. pylori AKP cells were cultured in collagen type I solution from rat tail (Sigma) pre- coated T flasks (Falcon) in Minigut medium composed of DMEM/ F12 (Gibco), 1% Penicillin/streptomycin, 1% N- 2 supplement (Gibco), 1% B- 27 supplement (Gibco), 10% FBS in a 37°C – 5% CO2 incubator.

    Article Title: Modulation of human dorsal root ganglion neuron firing by the Nav1.8 inhibitor suzetrigine.
    Article Snippet: Each well was then gently flooded with 1 mL of culture media consisting of BrainPhys media (Stemcell technologies, Cat. 05709), 1% penicillin/streptomycin, 1% GlutaMAX, 2% NeuroCult SM1 (Stemcell technologies, Cat 05711), 1% N- 2 Supplement (Thermo Scientific, Cat # 17502048), and 2% Fetal Bovine Serum.

    Article Title: Pharmacologically inducing regenerative cardiac cells by small molecule drugs
    Article Snippet: When the CMs recovered contraction, the culture medium was changed with chemically reprogramming medium (MCDB131 Gibco), 25 mg/l NaHCO3 (Sigma), 4 mM Glucose (Sigma), 1% Clutmine (Gibco), 1× N- 2 supplement (Gibco), and 20% 1× B- 27 supplement (Gibco), 10 μM CHIR99021 (Selleck), and 0.5 μM A- 485 (MCE).

    Article Title: Variant-specific effects of GBA1 mutations on dopaminergic neuron proteostasis.
    Article Snippet: Then, the media was changed to N2B27 neuronal cell culture medium composed of 49% Neurobasal medium (Life Technologies), 49% DMEM/F12 (Life Technologies), 1% Glutamax (Life Technologies), 1% penicillin–streptomycin (Capricorn), 1:100 B- 27 supplement (Thermo Fisher Scientific), and 1:200 N- 2 supplement (Thermo Fisher Scientific), with the addition of 150 μM ascorbic acid (Sigma- Aldrich).

    Article Title: High levels of chromosomal instability facilitate the tumor growth and sphere formation.
    Article Snippet: The HeLa Kyoto cell line is a popular subline of HeLa cells, a human cervical carcinoma- derived cell line, which is suitable for mitotic study due to its slow migration.24 In spheroid culture, cells were seeded to round- bottomed ultra- low attachment 96- well plates (Corning) at 1000 cells/well in renal epithelial cell growth basal medium (REBM) without FBS, and supplemented with B- 27 Supplement (Thermo Fisher Scientific), N- 2 Supplement (Thermo Fisher Scientific), and 10 μM ROCK inhibitor Y- 27632 (FUJIFILM Wako).

    Article Title: Assembly of neuron- and radial glial-cell-derived extracellular matrix molecules promotes radial migration of developing cortical neurons
    Article Snippet: DOI: https://doi.org/10.7554/eLife.92342 21 of 32 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Peptide, recombinant protein Recombinant Human Neurocan Protein R&D 6508- NC- 050 Peptide, recombinant protein Chondroitinase ABC Protease Free Seikagaku Corporation 100332 Commercial assay or kit BCA assay kit Thermo Fisher 23227 Commercial assay or kit RNeasy Mini Kit Qiagen 74104 Commercial assay or kit PowerUp SYBR Green Master Mix Thermo Fisher A25741 Commercial assay or kit DIG RNA Labeling Kit (SP6/T7) Roche 11175025910 Commercial assay or kit NEBuilder HiFi DNA Assembly Master Mix New England Biolabs E2621 Commercial assay or kit In- Fusion HD Cloning Kit Takara 639648 Commercial assay or kit KOD -Plus- Mutagenesis Kit Toyobo SMK- 101 Software, algorithm MASCOT server Matrix science https://www. matrixscience.com/server. html RRID:SCR_014322 Software, algorithm ImageJ Schneider et al., 2012 https://imagej.nih.gov/ij/ Other DAPI solution DOJINDO Lot.PF082 340–07971 Other N- 2 Supplement Thermo Fisher 17502–048 Other B- 27 Supplement Thermo Fisher 17504–044 Other Neurobasal Medium Thermo Fisher 21103–049 Other Penicillin- Streptomycin Thermo Fisher 15070–063 Other HBSS (X10) Thermo Fisher 14185–052 Other HEPES (1 M) Thermo Fisher 15630–080 Other Papain Worthington Biochemical Corporation LK003178 Other Fast Green Wako 061–00031 Other Protease Inhibitor Cocktail Sigma P8340- 1ML Other Streptavidin Magnetic Beads Thermo Fisher 88817 Other Poly- L- Ornithine Solution Wako 163–27421 Other Skim Milk Powder Wako 190–12865 Other Immobilon Transfer Membrane PVDF Millipore IPVH00010 Other Immobilon Western Chemiluminescent Millipore WBKLS0500 Other Sodium Hyaluronate (M2) (Mw:600,000~1,120,000) PG Research NaHA- M2 Other Biotinylated Sodium Hyaluronate (M1) (Mw:600,000~1,120,000) PG Research BHHA- M1 Other Carboxyfluorescein diacetate succinimidyl ester DOJINDO 341–07401 Other GFP- Trap- Agarose Chromotek gta- 20 Other ELISA 96 well plate IWAKI 3801–096 Other BLOCK ACE Powder KAC UKB80 Other ELISA POD Substrate TMB Solution Nacalai 05299–54 Continued Continued on next page Mubuchi et al. eLife 2023;12:RP92342.

    Article Title: Electrically Conductive Injectable Silk/PEDOT: PSS Hydrogel for Enhanced Neural Network Formation.
    Article Snippet: The majority of cell culture reagents including neurobasal medium, DMEM/F- 12, fetal bovine serum (FBS), N- 2 supplement, MEM nonessential amino acids (NEAA), β- mercaptoethanol, B- 27 supplement, GlutaMAX, and penicillin–streptomycin (Pen- Strep) were acquired from Thermo Fisher Scientific.

    Article Title: A synthetic method to assay polycystin channel biophysics
    Article Snippet: Cells were centrifuged at 300 × g for 4 min and plated on polylysine- coated glass coverslip at 1–4 × 105 density in basal medium eagle solution containing B27 supplement (17504044, Gibco), N- 2 supplement (17502048, Gibco), 0.5% penicillin/streptomycin (15140148, Gibco), 5% fetal bovine serum, 5% horse serum (260500,Gibco), and GlutaMax (350500, Gibco).

    Magnetic Beads:

    Article Title: GM-CSF is key in the efficacy of vaccine-induced reduction of Helicobacter pylori infection.
    Article Snippet: 2.11 | AKP cells co- culture with H. pylori AKP cells were cultured in collagen type I solution from rat tail (Sigma) pre- coated T flasks (Falcon) in Minigut medium composed of DMEM/ F12 (Gibco), 1% Penicillin/streptomycin, 1% N- 2 supplement (Gibco), 1% B- 27 supplement (Gibco), 10% FBS in a 37°C – 5% CO2 incubator.

    Article Title: Modulation of human dorsal root ganglion neuron firing by the Nav1.8 inhibitor suzetrigine.
    Article Snippet: Each well was then gently flooded with 1 mL of culture media consisting of BrainPhys media (Stemcell technologies, Cat. 05709), 1% penicillin/streptomycin, 1% GlutaMAX, 2% NeuroCult SM1 (Stemcell technologies, Cat 05711), 1% N- 2 Supplement (Thermo Scientific, Cat # 17502048), and 2% Fetal Bovine Serum.

    Article Title: Pharmacologically inducing regenerative cardiac cells by small molecule drugs
    Article Snippet: When the CMs recovered contraction, the culture medium was changed with chemically reprogramming medium (MCDB131 Gibco), 25 mg/l NaHCO3 (Sigma), 4 mM Glucose (Sigma), 1% Clutmine (Gibco), 1× N- 2 supplement (Gibco), and 20% 1× B- 27 supplement (Gibco), 10 μM CHIR99021 (Selleck), and 0.5 μM A- 485 (MCE).

    Article Title: Variant-specific effects of GBA1 mutations on dopaminergic neuron proteostasis.
    Article Snippet: Then, the media was changed to N2B27 neuronal cell culture medium composed of 49% Neurobasal medium (Life Technologies), 49% DMEM/F12 (Life Technologies), 1% Glutamax (Life Technologies), 1% penicillin–streptomycin (Capricorn), 1:100 B- 27 supplement (Thermo Fisher Scientific), and 1:200 N- 2 supplement (Thermo Fisher Scientific), with the addition of 150 μM ascorbic acid (Sigma- Aldrich).

    Article Title: High levels of chromosomal instability facilitate the tumor growth and sphere formation.
    Article Snippet: The HeLa Kyoto cell line is a popular subline of HeLa cells, a human cervical carcinoma- derived cell line, which is suitable for mitotic study due to its slow migration.24 In spheroid culture, cells were seeded to round- bottomed ultra- low attachment 96- well plates (Corning) at 1000 cells/well in renal epithelial cell growth basal medium (REBM) without FBS, and supplemented with B- 27 Supplement (Thermo Fisher Scientific), N- 2 Supplement (Thermo Fisher Scientific), and 10 μM ROCK inhibitor Y- 27632 (FUJIFILM Wako).

    Article Title: Assembly of neuron- and radial glial-cell-derived extracellular matrix molecules promotes radial migration of developing cortical neurons
    Article Snippet: DOI: https://doi.org/10.7554/eLife.92342 21 of 32 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Peptide, recombinant protein Recombinant Human Neurocan Protein R&D 6508- NC- 050 Peptide, recombinant protein Chondroitinase ABC Protease Free Seikagaku Corporation 100332 Commercial assay or kit BCA assay kit Thermo Fisher 23227 Commercial assay or kit RNeasy Mini Kit Qiagen 74104 Commercial assay or kit PowerUp SYBR Green Master Mix Thermo Fisher A25741 Commercial assay or kit DIG RNA Labeling Kit (SP6/T7) Roche 11175025910 Commercial assay or kit NEBuilder HiFi DNA Assembly Master Mix New England Biolabs E2621 Commercial assay or kit In- Fusion HD Cloning Kit Takara 639648 Commercial assay or kit KOD -Plus- Mutagenesis Kit Toyobo SMK- 101 Software, algorithm MASCOT server Matrix science https://www. matrixscience.com/server. html RRID:SCR_014322 Software, algorithm ImageJ Schneider et al., 2012 https://imagej.nih.gov/ij/ Other DAPI solution DOJINDO Lot.PF082 340–07971 Other N- 2 Supplement Thermo Fisher 17502–048 Other B- 27 Supplement Thermo Fisher 17504–044 Other Neurobasal Medium Thermo Fisher 21103–049 Other Penicillin- Streptomycin Thermo Fisher 15070–063 Other HBSS (X10) Thermo Fisher 14185–052 Other HEPES (1 M) Thermo Fisher 15630–080 Other Papain Worthington Biochemical Corporation LK003178 Other Fast Green Wako 061–00031 Other Protease Inhibitor Cocktail Sigma P8340- 1ML Other Streptavidin Magnetic Beads Thermo Fisher 88817 Other Poly- L- Ornithine Solution Wako 163–27421 Other Skim Milk Powder Wako 190–12865 Other Immobilon Transfer Membrane PVDF Millipore IPVH00010 Other Immobilon Western Chemiluminescent Millipore WBKLS0500 Other Sodium Hyaluronate (M2) (Mw:600,000~1,120,000) PG Research NaHA- M2 Other Biotinylated Sodium Hyaluronate (M1) (Mw:600,000~1,120,000) PG Research BHHA- M1 Other Carboxyfluorescein diacetate succinimidyl ester DOJINDO 341–07401 Other GFP- Trap- Agarose Chromotek gta- 20 Other ELISA 96 well plate IWAKI 3801–096 Other BLOCK ACE Powder KAC UKB80 Other ELISA POD Substrate TMB Solution Nacalai 05299–54 Continued Continued on next page Mubuchi et al. eLife 2023;12:RP92342.

    Article Title: Electrically Conductive Injectable Silk/PEDOT: PSS Hydrogel for Enhanced Neural Network Formation.
    Article Snippet: The majority of cell culture reagents including neurobasal medium, DMEM/F- 12, fetal bovine serum (FBS), N- 2 supplement, MEM nonessential amino acids (NEAA), β- mercaptoethanol, B- 27 supplement, GlutaMAX, and penicillin–streptomycin (Pen- Strep) were acquired from Thermo Fisher Scientific.

    Article Title: A synthetic method to assay polycystin channel biophysics
    Article Snippet: Cells were centrifuged at 300 × g for 4 min and plated on polylysine- coated glass coverslip at 1–4 × 105 density in basal medium eagle solution containing B27 supplement (17504044, Gibco), N- 2 supplement (17502048, Gibco), 0.5% penicillin/streptomycin (15140148, Gibco), 5% fetal bovine serum, 5% horse serum (260500,Gibco), and GlutaMax (350500, Gibco).

    Milk:

    Article Title: GM-CSF is key in the efficacy of vaccine-induced reduction of Helicobacter pylori infection.
    Article Snippet: 2.11 | AKP cells co- culture with H. pylori AKP cells were cultured in collagen type I solution from rat tail (Sigma) pre- coated T flasks (Falcon) in Minigut medium composed of DMEM/ F12 (Gibco), 1% Penicillin/streptomycin, 1% N- 2 supplement (Gibco), 1% B- 27 supplement (Gibco), 10% FBS in a 37°C – 5% CO2 incubator.

    Article Title: Modulation of human dorsal root ganglion neuron firing by the Nav1.8 inhibitor suzetrigine.
    Article Snippet: Each well was then gently flooded with 1 mL of culture media consisting of BrainPhys media (Stemcell technologies, Cat. 05709), 1% penicillin/streptomycin, 1% GlutaMAX, 2% NeuroCult SM1 (Stemcell technologies, Cat 05711), 1% N- 2 Supplement (Thermo Scientific, Cat # 17502048), and 2% Fetal Bovine Serum.

    Article Title: Pharmacologically inducing regenerative cardiac cells by small molecule drugs
    Article Snippet: When the CMs recovered contraction, the culture medium was changed with chemically reprogramming medium (MCDB131 Gibco), 25 mg/l NaHCO3 (Sigma), 4 mM Glucose (Sigma), 1% Clutmine (Gibco), 1× N- 2 supplement (Gibco), and 20% 1× B- 27 supplement (Gibco), 10 μM CHIR99021 (Selleck), and 0.5 μM A- 485 (MCE).

    Article Title: Variant-specific effects of GBA1 mutations on dopaminergic neuron proteostasis.
    Article Snippet: Then, the media was changed to N2B27 neuronal cell culture medium composed of 49% Neurobasal medium (Life Technologies), 49% DMEM/F12 (Life Technologies), 1% Glutamax (Life Technologies), 1% penicillin–streptomycin (Capricorn), 1:100 B- 27 supplement (Thermo Fisher Scientific), and 1:200 N- 2 supplement (Thermo Fisher Scientific), with the addition of 150 μM ascorbic acid (Sigma- Aldrich).

    Article Title: High levels of chromosomal instability facilitate the tumor growth and sphere formation.
    Article Snippet: The HeLa Kyoto cell line is a popular subline of HeLa cells, a human cervical carcinoma- derived cell line, which is suitable for mitotic study due to its slow migration.24 In spheroid culture, cells were seeded to round- bottomed ultra- low attachment 96- well plates (Corning) at 1000 cells/well in renal epithelial cell growth basal medium (REBM) without FBS, and supplemented with B- 27 Supplement (Thermo Fisher Scientific), N- 2 Supplement (Thermo Fisher Scientific), and 10 μM ROCK inhibitor Y- 27632 (FUJIFILM Wako).

    Article Title: Assembly of neuron- and radial glial-cell-derived extracellular matrix molecules promotes radial migration of developing cortical neurons
    Article Snippet: DOI: https://doi.org/10.7554/eLife.92342 21 of 32 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Peptide, recombinant protein Recombinant Human Neurocan Protein R&D 6508- NC- 050 Peptide, recombinant protein Chondroitinase ABC Protease Free Seikagaku Corporation 100332 Commercial assay or kit BCA assay kit Thermo Fisher 23227 Commercial assay or kit RNeasy Mini Kit Qiagen 74104 Commercial assay or kit PowerUp SYBR Green Master Mix Thermo Fisher A25741 Commercial assay or kit DIG RNA Labeling Kit (SP6/T7) Roche 11175025910 Commercial assay or kit NEBuilder HiFi DNA Assembly Master Mix New England Biolabs E2621 Commercial assay or kit In- Fusion HD Cloning Kit Takara 639648 Commercial assay or kit KOD -Plus- Mutagenesis Kit Toyobo SMK- 101 Software, algorithm MASCOT server Matrix science https://www. matrixscience.com/server. html RRID:SCR_014322 Software, algorithm ImageJ Schneider et al., 2012 https://imagej.nih.gov/ij/ Other DAPI solution DOJINDO Lot.PF082 340–07971 Other N- 2 Supplement Thermo Fisher 17502–048 Other B- 27 Supplement Thermo Fisher 17504–044 Other Neurobasal Medium Thermo Fisher 21103–049 Other Penicillin- Streptomycin Thermo Fisher 15070–063 Other HBSS (X10) Thermo Fisher 14185–052 Other HEPES (1 M) Thermo Fisher 15630–080 Other Papain Worthington Biochemical Corporation LK003178 Other Fast Green Wako 061–00031 Other Protease Inhibitor Cocktail Sigma P8340- 1ML Other Streptavidin Magnetic Beads Thermo Fisher 88817 Other Poly- L- Ornithine Solution Wako 163–27421 Other Skim Milk Powder Wako 190–12865 Other Immobilon Transfer Membrane PVDF Millipore IPVH00010 Other Immobilon Western Chemiluminescent Millipore WBKLS0500 Other Sodium Hyaluronate (M2) (Mw:600,000~1,120,000) PG Research NaHA- M2 Other Biotinylated Sodium Hyaluronate (M1) (Mw:600,000~1,120,000) PG Research BHHA- M1 Other Carboxyfluorescein diacetate succinimidyl ester DOJINDO 341–07401 Other GFP- Trap- Agarose Chromotek gta- 20 Other ELISA 96 well plate IWAKI 3801–096 Other BLOCK ACE Powder KAC UKB80 Other ELISA POD Substrate TMB Solution Nacalai 05299–54 Continued Continued on next page Mubuchi et al. eLife 2023;12:RP92342.

    Article Title: Electrically Conductive Injectable Silk/PEDOT: PSS Hydrogel for Enhanced Neural Network Formation.
    Article Snippet: The majority of cell culture reagents including neurobasal medium, DMEM/F- 12, fetal bovine serum (FBS), N- 2 supplement, MEM nonessential amino acids (NEAA), β- mercaptoethanol, B- 27 supplement, GlutaMAX, and penicillin–streptomycin (Pen- Strep) were acquired from Thermo Fisher Scientific.

    Article Title: A synthetic method to assay polycystin channel biophysics
    Article Snippet: Cells were centrifuged at 300 × g for 4 min and plated on polylysine- coated glass coverslip at 1–4 × 105 density in basal medium eagle solution containing B27 supplement (17504044, Gibco), N- 2 supplement (17502048, Gibco), 0.5% penicillin/streptomycin (15140148, Gibco), 5% fetal bovine serum, 5% horse serum (260500,Gibco), and GlutaMax (350500, Gibco).

    Membrane:

    Article Title: GM-CSF is key in the efficacy of vaccine-induced reduction of Helicobacter pylori infection.
    Article Snippet: 2.11 | AKP cells co- culture with H. pylori AKP cells were cultured in collagen type I solution from rat tail (Sigma) pre- coated T flasks (Falcon) in Minigut medium composed of DMEM/ F12 (Gibco), 1% Penicillin/streptomycin, 1% N- 2 supplement (Gibco), 1% B- 27 supplement (Gibco), 10% FBS in a 37°C – 5% CO2 incubator.

    Article Title: Modulation of human dorsal root ganglion neuron firing by the Nav1.8 inhibitor suzetrigine.
    Article Snippet: Each well was then gently flooded with 1 mL of culture media consisting of BrainPhys media (Stemcell technologies, Cat. 05709), 1% penicillin/streptomycin, 1% GlutaMAX, 2% NeuroCult SM1 (Stemcell technologies, Cat 05711), 1% N- 2 Supplement (Thermo Scientific, Cat # 17502048), and 2% Fetal Bovine Serum.

    Article Title: Pharmacologically inducing regenerative cardiac cells by small molecule drugs
    Article Snippet: When the CMs recovered contraction, the culture medium was changed with chemically reprogramming medium (MCDB131 Gibco), 25 mg/l NaHCO3 (Sigma), 4 mM Glucose (Sigma), 1% Clutmine (Gibco), 1× N- 2 supplement (Gibco), and 20% 1× B- 27 supplement (Gibco), 10 μM CHIR99021 (Selleck), and 0.5 μM A- 485 (MCE).

    Article Title: Variant-specific effects of GBA1 mutations on dopaminergic neuron proteostasis.
    Article Snippet: Then, the media was changed to N2B27 neuronal cell culture medium composed of 49% Neurobasal medium (Life Technologies), 49% DMEM/F12 (Life Technologies), 1% Glutamax (Life Technologies), 1% penicillin–streptomycin (Capricorn), 1:100 B- 27 supplement (Thermo Fisher Scientific), and 1:200 N- 2 supplement (Thermo Fisher Scientific), with the addition of 150 μM ascorbic acid (Sigma- Aldrich).

    Article Title: High levels of chromosomal instability facilitate the tumor growth and sphere formation.
    Article Snippet: The HeLa Kyoto cell line is a popular subline of HeLa cells, a human cervical carcinoma- derived cell line, which is suitable for mitotic study due to its slow migration.24 In spheroid culture, cells were seeded to round- bottomed ultra- low attachment 96- well plates (Corning) at 1000 cells/well in renal epithelial cell growth basal medium (REBM) without FBS, and supplemented with B- 27 Supplement (Thermo Fisher Scientific), N- 2 Supplement (Thermo Fisher Scientific), and 10 μM ROCK inhibitor Y- 27632 (FUJIFILM Wako).

    Article Title: Assembly of neuron- and radial glial-cell-derived extracellular matrix molecules promotes radial migration of developing cortical neurons
    Article Snippet: DOI: https://doi.org/10.7554/eLife.92342 21 of 32 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Peptide, recombinant protein Recombinant Human Neurocan Protein R&D 6508- NC- 050 Peptide, recombinant protein Chondroitinase ABC Protease Free Seikagaku Corporation 100332 Commercial assay or kit BCA assay kit Thermo Fisher 23227 Commercial assay or kit RNeasy Mini Kit Qiagen 74104 Commercial assay or kit PowerUp SYBR Green Master Mix Thermo Fisher A25741 Commercial assay or kit DIG RNA Labeling Kit (SP6/T7) Roche 11175025910 Commercial assay or kit NEBuilder HiFi DNA Assembly Master Mix New England Biolabs E2621 Commercial assay or kit In- Fusion HD Cloning Kit Takara 639648 Commercial assay or kit KOD -Plus- Mutagenesis Kit Toyobo SMK- 101 Software, algorithm MASCOT server Matrix science https://www. matrixscience.com/server. html RRID:SCR_014322 Software, algorithm ImageJ Schneider et al., 2012 https://imagej.nih.gov/ij/ Other DAPI solution DOJINDO Lot.PF082 340–07971 Other N- 2 Supplement Thermo Fisher 17502–048 Other B- 27 Supplement Thermo Fisher 17504–044 Other Neurobasal Medium Thermo Fisher 21103–049 Other Penicillin- Streptomycin Thermo Fisher 15070–063 Other HBSS (X10) Thermo Fisher 14185–052 Other HEPES (1 M) Thermo Fisher 15630–080 Other Papain Worthington Biochemical Corporation LK003178 Other Fast Green Wako 061–00031 Other Protease Inhibitor Cocktail Sigma P8340- 1ML Other Streptavidin Magnetic Beads Thermo Fisher 88817 Other Poly- L- Ornithine Solution Wako 163–27421 Other Skim Milk Powder Wako 190–12865 Other Immobilon Transfer Membrane PVDF Millipore IPVH00010 Other Immobilon Western Chemiluminescent Millipore WBKLS0500 Other Sodium Hyaluronate (M2) (Mw:600,000~1,120,000) PG Research NaHA- M2 Other Biotinylated Sodium Hyaluronate (M1) (Mw:600,000~1,120,000) PG Research BHHA- M1 Other Carboxyfluorescein diacetate succinimidyl ester DOJINDO 341–07401 Other GFP- Trap- Agarose Chromotek gta- 20 Other ELISA 96 well plate IWAKI 3801–096 Other BLOCK ACE Powder KAC UKB80 Other ELISA POD Substrate TMB Solution Nacalai 05299–54 Continued Continued on next page Mubuchi et al. eLife 2023;12:RP92342.

    Article Title: Electrically Conductive Injectable Silk/PEDOT: PSS Hydrogel for Enhanced Neural Network Formation.
    Article Snippet: The majority of cell culture reagents including neurobasal medium, DMEM/F- 12, fetal bovine serum (FBS), N- 2 supplement, MEM nonessential amino acids (NEAA), β- mercaptoethanol, B- 27 supplement, GlutaMAX, and penicillin–streptomycin (Pen- Strep) were acquired from Thermo Fisher Scientific.

    Article Title: A synthetic method to assay polycystin channel biophysics
    Article Snippet: Cells were centrifuged at 300 × g for 4 min and plated on polylysine- coated glass coverslip at 1–4 × 105 density in basal medium eagle solution containing B27 supplement (17504044, Gibco), N- 2 supplement (17502048, Gibco), 0.5% penicillin/streptomycin (15140148, Gibco), 5% fetal bovine serum, 5% horse serum (260500,Gibco), and GlutaMax (350500, Gibco).

    Western Blot:

    Article Title: GM-CSF is key in the efficacy of vaccine-induced reduction of Helicobacter pylori infection.
    Article Snippet: 2.11 | AKP cells co- culture with H. pylori AKP cells were cultured in collagen type I solution from rat tail (Sigma) pre- coated T flasks (Falcon) in Minigut medium composed of DMEM/ F12 (Gibco), 1% Penicillin/streptomycin, 1% N- 2 supplement (Gibco), 1% B- 27 supplement (Gibco), 10% FBS in a 37°C – 5% CO2 incubator.

    Article Title: Modulation of human dorsal root ganglion neuron firing by the Nav1.8 inhibitor suzetrigine.
    Article Snippet: Each well was then gently flooded with 1 mL of culture media consisting of BrainPhys media (Stemcell technologies, Cat. 05709), 1% penicillin/streptomycin, 1% GlutaMAX, 2% NeuroCult SM1 (Stemcell technologies, Cat 05711), 1% N- 2 Supplement (Thermo Scientific, Cat # 17502048), and 2% Fetal Bovine Serum.

    Article Title: Pharmacologically inducing regenerative cardiac cells by small molecule drugs
    Article Snippet: When the CMs recovered contraction, the culture medium was changed with chemically reprogramming medium (MCDB131 Gibco), 25 mg/l NaHCO3 (Sigma), 4 mM Glucose (Sigma), 1% Clutmine (Gibco), 1× N- 2 supplement (Gibco), and 20% 1× B- 27 supplement (Gibco), 10 μM CHIR99021 (Selleck), and 0.5 μM A- 485 (MCE).

    Article Title: Variant-specific effects of GBA1 mutations on dopaminergic neuron proteostasis.
    Article Snippet: Then, the media was changed to N2B27 neuronal cell culture medium composed of 49% Neurobasal medium (Life Technologies), 49% DMEM/F12 (Life Technologies), 1% Glutamax (Life Technologies), 1% penicillin–streptomycin (Capricorn), 1:100 B- 27 supplement (Thermo Fisher Scientific), and 1:200 N- 2 supplement (Thermo Fisher Scientific), with the addition of 150 μM ascorbic acid (Sigma- Aldrich).

    Article Title: High levels of chromosomal instability facilitate the tumor growth and sphere formation.
    Article Snippet: The HeLa Kyoto cell line is a popular subline of HeLa cells, a human cervical carcinoma- derived cell line, which is suitable for mitotic study due to its slow migration.24 In spheroid culture, cells were seeded to round- bottomed ultra- low attachment 96- well plates (Corning) at 1000 cells/well in renal epithelial cell growth basal medium (REBM) without FBS, and supplemented with B- 27 Supplement (Thermo Fisher Scientific), N- 2 Supplement (Thermo Fisher Scientific), and 10 μM ROCK inhibitor Y- 27632 (FUJIFILM Wako).

    Article Title: Assembly of neuron- and radial glial-cell-derived extracellular matrix molecules promotes radial migration of developing cortical neurons
    Article Snippet: DOI: https://doi.org/10.7554/eLife.92342 21 of 32 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Peptide, recombinant protein Recombinant Human Neurocan Protein R&D 6508- NC- 050 Peptide, recombinant protein Chondroitinase ABC Protease Free Seikagaku Corporation 100332 Commercial assay or kit BCA assay kit Thermo Fisher 23227 Commercial assay or kit RNeasy Mini Kit Qiagen 74104 Commercial assay or kit PowerUp SYBR Green Master Mix Thermo Fisher A25741 Commercial assay or kit DIG RNA Labeling Kit (SP6/T7) Roche 11175025910 Commercial assay or kit NEBuilder HiFi DNA Assembly Master Mix New England Biolabs E2621 Commercial assay or kit In- Fusion HD Cloning Kit Takara 639648 Commercial assay or kit KOD -Plus- Mutagenesis Kit Toyobo SMK- 101 Software, algorithm MASCOT server Matrix science https://www. matrixscience.com/server. html RRID:SCR_014322 Software, algorithm ImageJ Schneider et al., 2012 https://imagej.nih.gov/ij/ Other DAPI solution DOJINDO Lot.PF082 340–07971 Other N- 2 Supplement Thermo Fisher 17502–048 Other B- 27 Supplement Thermo Fisher 17504–044 Other Neurobasal Medium Thermo Fisher 21103–049 Other Penicillin- Streptomycin Thermo Fisher 15070–063 Other HBSS (X10) Thermo Fisher 14185–052 Other HEPES (1 M) Thermo Fisher 15630–080 Other Papain Worthington Biochemical Corporation LK003178 Other Fast Green Wako 061–00031 Other Protease Inhibitor Cocktail Sigma P8340- 1ML Other Streptavidin Magnetic Beads Thermo Fisher 88817 Other Poly- L- Ornithine Solution Wako 163–27421 Other Skim Milk Powder Wako 190–12865 Other Immobilon Transfer Membrane PVDF Millipore IPVH00010 Other Immobilon Western Chemiluminescent Millipore WBKLS0500 Other Sodium Hyaluronate (M2) (Mw:600,000~1,120,000) PG Research NaHA- M2 Other Biotinylated Sodium Hyaluronate (M1) (Mw:600,000~1,120,000) PG Research BHHA- M1 Other Carboxyfluorescein diacetate succinimidyl ester DOJINDO 341–07401 Other GFP- Trap- Agarose Chromotek gta- 20 Other ELISA 96 well plate IWAKI 3801–096 Other BLOCK ACE Powder KAC UKB80 Other ELISA POD Substrate TMB Solution Nacalai 05299–54 Continued Continued on next page Mubuchi et al. eLife 2023;12:RP92342.

    Article Title: Electrically Conductive Injectable Silk/PEDOT: PSS Hydrogel for Enhanced Neural Network Formation.
    Article Snippet: The majority of cell culture reagents including neurobasal medium, DMEM/F- 12, fetal bovine serum (FBS), N- 2 supplement, MEM nonessential amino acids (NEAA), β- mercaptoethanol, B- 27 supplement, GlutaMAX, and penicillin–streptomycin (Pen- Strep) were acquired from Thermo Fisher Scientific.

    Article Title: A synthetic method to assay polycystin channel biophysics
    Article Snippet: Cells were centrifuged at 300 × g for 4 min and plated on polylysine- coated glass coverslip at 1–4 × 105 density in basal medium eagle solution containing B27 supplement (17504044, Gibco), N- 2 supplement (17502048, Gibco), 0.5% penicillin/streptomycin (15140148, Gibco), 5% fetal bovine serum, 5% horse serum (260500,Gibco), and GlutaMax (350500, Gibco).

    Enzyme-linked Immunosorbent Assay:

    Article Title: GM-CSF is key in the efficacy of vaccine-induced reduction of Helicobacter pylori infection.
    Article Snippet: 2.11 | AKP cells co- culture with H. pylori AKP cells were cultured in collagen type I solution from rat tail (Sigma) pre- coated T flasks (Falcon) in Minigut medium composed of DMEM/ F12 (Gibco), 1% Penicillin/streptomycin, 1% N- 2 supplement (Gibco), 1% B- 27 supplement (Gibco), 10% FBS in a 37°C – 5% CO2 incubator.

    Article Title: Modulation of human dorsal root ganglion neuron firing by the Nav1.8 inhibitor suzetrigine.
    Article Snippet: Each well was then gently flooded with 1 mL of culture media consisting of BrainPhys media (Stemcell technologies, Cat. 05709), 1% penicillin/streptomycin, 1% GlutaMAX, 2% NeuroCult SM1 (Stemcell technologies, Cat 05711), 1% N- 2 Supplement (Thermo Scientific, Cat # 17502048), and 2% Fetal Bovine Serum.

    Article Title: Pharmacologically inducing regenerative cardiac cells by small molecule drugs
    Article Snippet: When the CMs recovered contraction, the culture medium was changed with chemically reprogramming medium (MCDB131 Gibco), 25 mg/l NaHCO3 (Sigma), 4 mM Glucose (Sigma), 1% Clutmine (Gibco), 1× N- 2 supplement (Gibco), and 20% 1× B- 27 supplement (Gibco), 10 μM CHIR99021 (Selleck), and 0.5 μM A- 485 (MCE).

    Article Title: Variant-specific effects of GBA1 mutations on dopaminergic neuron proteostasis.
    Article Snippet: Then, the media was changed to N2B27 neuronal cell culture medium composed of 49% Neurobasal medium (Life Technologies), 49% DMEM/F12 (Life Technologies), 1% Glutamax (Life Technologies), 1% penicillin–streptomycin (Capricorn), 1:100 B- 27 supplement (Thermo Fisher Scientific), and 1:200 N- 2 supplement (Thermo Fisher Scientific), with the addition of 150 μM ascorbic acid (Sigma- Aldrich).

    Article Title: High levels of chromosomal instability facilitate the tumor growth and sphere formation.
    Article Snippet: The HeLa Kyoto cell line is a popular subline of HeLa cells, a human cervical carcinoma- derived cell line, which is suitable for mitotic study due to its slow migration.24 In spheroid culture, cells were seeded to round- bottomed ultra- low attachment 96- well plates (Corning) at 1000 cells/well in renal epithelial cell growth basal medium (REBM) without FBS, and supplemented with B- 27 Supplement (Thermo Fisher Scientific), N- 2 Supplement (Thermo Fisher Scientific), and 10 μM ROCK inhibitor Y- 27632 (FUJIFILM Wako).

    Article Title: Assembly of neuron- and radial glial-cell-derived extracellular matrix molecules promotes radial migration of developing cortical neurons
    Article Snippet: DOI: https://doi.org/10.7554/eLife.92342 21 of 32 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Peptide, recombinant protein Recombinant Human Neurocan Protein R&D 6508- NC- 050 Peptide, recombinant protein Chondroitinase ABC Protease Free Seikagaku Corporation 100332 Commercial assay or kit BCA assay kit Thermo Fisher 23227 Commercial assay or kit RNeasy Mini Kit Qiagen 74104 Commercial assay or kit PowerUp SYBR Green Master Mix Thermo Fisher A25741 Commercial assay or kit DIG RNA Labeling Kit (SP6/T7) Roche 11175025910 Commercial assay or kit NEBuilder HiFi DNA Assembly Master Mix New England Biolabs E2621 Commercial assay or kit In- Fusion HD Cloning Kit Takara 639648 Commercial assay or kit KOD -Plus- Mutagenesis Kit Toyobo SMK- 101 Software, algorithm MASCOT server Matrix science https://www. matrixscience.com/server. html RRID:SCR_014322 Software, algorithm ImageJ Schneider et al., 2012 https://imagej.nih.gov/ij/ Other DAPI solution DOJINDO Lot.PF082 340–07971 Other N- 2 Supplement Thermo Fisher 17502–048 Other B- 27 Supplement Thermo Fisher 17504–044 Other Neurobasal Medium Thermo Fisher 21103–049 Other Penicillin- Streptomycin Thermo Fisher 15070–063 Other HBSS (X10) Thermo Fisher 14185–052 Other HEPES (1 M) Thermo Fisher 15630–080 Other Papain Worthington Biochemical Corporation LK003178 Other Fast Green Wako 061–00031 Other Protease Inhibitor Cocktail Sigma P8340- 1ML Other Streptavidin Magnetic Beads Thermo Fisher 88817 Other Poly- L- Ornithine Solution Wako 163–27421 Other Skim Milk Powder Wako 190–12865 Other Immobilon Transfer Membrane PVDF Millipore IPVH00010 Other Immobilon Western Chemiluminescent Millipore WBKLS0500 Other Sodium Hyaluronate (M2) (Mw:600,000~1,120,000) PG Research NaHA- M2 Other Biotinylated Sodium Hyaluronate (M1) (Mw:600,000~1,120,000) PG Research BHHA- M1 Other Carboxyfluorescein diacetate succinimidyl ester DOJINDO 341–07401 Other GFP- Trap- Agarose Chromotek gta- 20 Other ELISA 96 well plate IWAKI 3801–096 Other BLOCK ACE Powder KAC UKB80 Other ELISA POD Substrate TMB Solution Nacalai 05299–54 Continued Continued on next page Mubuchi et al. eLife 2023;12:RP92342.

    Article Title: Electrically Conductive Injectable Silk/PEDOT: PSS Hydrogel for Enhanced Neural Network Formation.
    Article Snippet: The majority of cell culture reagents including neurobasal medium, DMEM/F- 12, fetal bovine serum (FBS), N- 2 supplement, MEM nonessential amino acids (NEAA), β- mercaptoethanol, B- 27 supplement, GlutaMAX, and penicillin–streptomycin (Pen- Strep) were acquired from Thermo Fisher Scientific.

    Article Title: A synthetic method to assay polycystin channel biophysics
    Article Snippet: Cells were centrifuged at 300 × g for 4 min and plated on polylysine- coated glass coverslip at 1–4 × 105 density in basal medium eagle solution containing B27 supplement (17504044, Gibco), N- 2 supplement (17502048, Gibco), 0.5% penicillin/streptomycin (15140148, Gibco), 5% fetal bovine serum, 5% horse serum (260500,Gibco), and GlutaMax (350500, Gibco).

    Blocking Assay:

    Article Title: GM-CSF is key in the efficacy of vaccine-induced reduction of Helicobacter pylori infection.
    Article Snippet: 2.11 | AKP cells co- culture with H. pylori AKP cells were cultured in collagen type I solution from rat tail (Sigma) pre- coated T flasks (Falcon) in Minigut medium composed of DMEM/ F12 (Gibco), 1% Penicillin/streptomycin, 1% N- 2 supplement (Gibco), 1% B- 27 supplement (Gibco), 10% FBS in a 37°C – 5% CO2 incubator.

    Article Title: Modulation of human dorsal root ganglion neuron firing by the Nav1.8 inhibitor suzetrigine.
    Article Snippet: Each well was then gently flooded with 1 mL of culture media consisting of BrainPhys media (Stemcell technologies, Cat. 05709), 1% penicillin/streptomycin, 1% GlutaMAX, 2% NeuroCult SM1 (Stemcell technologies, Cat 05711), 1% N- 2 Supplement (Thermo Scientific, Cat # 17502048), and 2% Fetal Bovine Serum.

    Article Title: Pharmacologically inducing regenerative cardiac cells by small molecule drugs
    Article Snippet: When the CMs recovered contraction, the culture medium was changed with chemically reprogramming medium (MCDB131 Gibco), 25 mg/l NaHCO3 (Sigma), 4 mM Glucose (Sigma), 1% Clutmine (Gibco), 1× N- 2 supplement (Gibco), and 20% 1× B- 27 supplement (Gibco), 10 μM CHIR99021 (Selleck), and 0.5 μM A- 485 (MCE).

    Article Title: Variant-specific effects of GBA1 mutations on dopaminergic neuron proteostasis.
    Article Snippet: Then, the media was changed to N2B27 neuronal cell culture medium composed of 49% Neurobasal medium (Life Technologies), 49% DMEM/F12 (Life Technologies), 1% Glutamax (Life Technologies), 1% penicillin–streptomycin (Capricorn), 1:100 B- 27 supplement (Thermo Fisher Scientific), and 1:200 N- 2 supplement (Thermo Fisher Scientific), with the addition of 150 μM ascorbic acid (Sigma- Aldrich).

    Article Title: High levels of chromosomal instability facilitate the tumor growth and sphere formation.
    Article Snippet: The HeLa Kyoto cell line is a popular subline of HeLa cells, a human cervical carcinoma- derived cell line, which is suitable for mitotic study due to its slow migration.24 In spheroid culture, cells were seeded to round- bottomed ultra- low attachment 96- well plates (Corning) at 1000 cells/well in renal epithelial cell growth basal medium (REBM) without FBS, and supplemented with B- 27 Supplement (Thermo Fisher Scientific), N- 2 Supplement (Thermo Fisher Scientific), and 10 μM ROCK inhibitor Y- 27632 (FUJIFILM Wako).

    Article Title: Assembly of neuron- and radial glial-cell-derived extracellular matrix molecules promotes radial migration of developing cortical neurons
    Article Snippet: DOI: https://doi.org/10.7554/eLife.92342 21 of 32 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Peptide, recombinant protein Recombinant Human Neurocan Protein R&D 6508- NC- 050 Peptide, recombinant protein Chondroitinase ABC Protease Free Seikagaku Corporation 100332 Commercial assay or kit BCA assay kit Thermo Fisher 23227 Commercial assay or kit RNeasy Mini Kit Qiagen 74104 Commercial assay or kit PowerUp SYBR Green Master Mix Thermo Fisher A25741 Commercial assay or kit DIG RNA Labeling Kit (SP6/T7) Roche 11175025910 Commercial assay or kit NEBuilder HiFi DNA Assembly Master Mix New England Biolabs E2621 Commercial assay or kit In- Fusion HD Cloning Kit Takara 639648 Commercial assay or kit KOD -Plus- Mutagenesis Kit Toyobo SMK- 101 Software, algorithm MASCOT server Matrix science https://www. matrixscience.com/server. html RRID:SCR_014322 Software, algorithm ImageJ Schneider et al., 2012 https://imagej.nih.gov/ij/ Other DAPI solution DOJINDO Lot.PF082 340–07971 Other N- 2 Supplement Thermo Fisher 17502–048 Other B- 27 Supplement Thermo Fisher 17504–044 Other Neurobasal Medium Thermo Fisher 21103–049 Other Penicillin- Streptomycin Thermo Fisher 15070–063 Other HBSS (X10) Thermo Fisher 14185–052 Other HEPES (1 M) Thermo Fisher 15630–080 Other Papain Worthington Biochemical Corporation LK003178 Other Fast Green Wako 061–00031 Other Protease Inhibitor Cocktail Sigma P8340- 1ML Other Streptavidin Magnetic Beads Thermo Fisher 88817 Other Poly- L- Ornithine Solution Wako 163–27421 Other Skim Milk Powder Wako 190–12865 Other Immobilon Transfer Membrane PVDF Millipore IPVH00010 Other Immobilon Western Chemiluminescent Millipore WBKLS0500 Other Sodium Hyaluronate (M2) (Mw:600,000~1,120,000) PG Research NaHA- M2 Other Biotinylated Sodium Hyaluronate (M1) (Mw:600,000~1,120,000) PG Research BHHA- M1 Other Carboxyfluorescein diacetate succinimidyl ester DOJINDO 341–07401 Other GFP- Trap- Agarose Chromotek gta- 20 Other ELISA 96 well plate IWAKI 3801–096 Other BLOCK ACE Powder KAC UKB80 Other ELISA POD Substrate TMB Solution Nacalai 05299–54 Continued Continued on next page Mubuchi et al. eLife 2023;12:RP92342.

    Article Title: Electrically Conductive Injectable Silk/PEDOT: PSS Hydrogel for Enhanced Neural Network Formation.
    Article Snippet: The majority of cell culture reagents including neurobasal medium, DMEM/F- 12, fetal bovine serum (FBS), N- 2 supplement, MEM nonessential amino acids (NEAA), β- mercaptoethanol, B- 27 supplement, GlutaMAX, and penicillin–streptomycin (Pen- Strep) were acquired from Thermo Fisher Scientific.

    Article Title: A synthetic method to assay polycystin channel biophysics
    Article Snippet: Cells were centrifuged at 300 × g for 4 min and plated on polylysine- coated glass coverslip at 1–4 × 105 density in basal medium eagle solution containing B27 supplement (17504044, Gibco), N- 2 supplement (17502048, Gibco), 0.5% penicillin/streptomycin (15140148, Gibco), 5% fetal bovine serum, 5% horse serum (260500,Gibco), and GlutaMax (350500, Gibco).

    Derivative Assay:

    Article Title: GM-CSF is key in the efficacy of vaccine-induced reduction of Helicobacter pylori infection.
    Article Snippet: 2.11 | AKP cells co- culture with H. pylori AKP cells were cultured in collagen type I solution from rat tail (Sigma) pre- coated T flasks (Falcon) in Minigut medium composed of DMEM/ F12 (Gibco), 1% Penicillin/streptomycin, 1% N- 2 supplement (Gibco), 1% B- 27 supplement (Gibco), 10% FBS in a 37°C – 5% CO2 incubator.

    Article Title: Modulation of human dorsal root ganglion neuron firing by the Nav1.8 inhibitor suzetrigine.
    Article Snippet: Each well was then gently flooded with 1 mL of culture media consisting of BrainPhys media (Stemcell technologies, Cat. 05709), 1% penicillin/streptomycin, 1% GlutaMAX, 2% NeuroCult SM1 (Stemcell technologies, Cat 05711), 1% N- 2 Supplement (Thermo Scientific, Cat # 17502048), and 2% Fetal Bovine Serum.

    Article Title: Pharmacologically inducing regenerative cardiac cells by small molecule drugs
    Article Snippet: When the CMs recovered contraction, the culture medium was changed with chemically reprogramming medium (MCDB131 Gibco), 25 mg/l NaHCO3 (Sigma), 4 mM Glucose (Sigma), 1% Clutmine (Gibco), 1× N- 2 supplement (Gibco), and 20% 1× B- 27 supplement (Gibco), 10 μM CHIR99021 (Selleck), and 0.5 μM A- 485 (MCE).

    Article Title: Variant-specific effects of GBA1 mutations on dopaminergic neuron proteostasis.
    Article Snippet: Then, the media was changed to N2B27 neuronal cell culture medium composed of 49% Neurobasal medium (Life Technologies), 49% DMEM/F12 (Life Technologies), 1% Glutamax (Life Technologies), 1% penicillin–streptomycin (Capricorn), 1:100 B- 27 supplement (Thermo Fisher Scientific), and 1:200 N- 2 supplement (Thermo Fisher Scientific), with the addition of 150 μM ascorbic acid (Sigma- Aldrich).

    Article Title: High levels of chromosomal instability facilitate the tumor growth and sphere formation.
    Article Snippet: The HeLa Kyoto cell line is a popular subline of HeLa cells, a human cervical carcinoma- derived cell line, which is suitable for mitotic study due to its slow migration.24 In spheroid culture, cells were seeded to round- bottomed ultra- low attachment 96- well plates (Corning) at 1000 cells/well in renal epithelial cell growth basal medium (REBM) without FBS, and supplemented with B- 27 Supplement (Thermo Fisher Scientific), N- 2 Supplement (Thermo Fisher Scientific), and 10 μM ROCK inhibitor Y- 27632 (FUJIFILM Wako).

    Article Title: Assembly of neuron- and radial glial-cell-derived extracellular matrix molecules promotes radial migration of developing cortical neurons
    Article Snippet: DOI: https://doi.org/10.7554/eLife.92342 21 of 32 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Peptide, recombinant protein Recombinant Human Neurocan Protein R&D 6508- NC- 050 Peptide, recombinant protein Chondroitinase ABC Protease Free Seikagaku Corporation 100332 Commercial assay or kit BCA assay kit Thermo Fisher 23227 Commercial assay or kit RNeasy Mini Kit Qiagen 74104 Commercial assay or kit PowerUp SYBR Green Master Mix Thermo Fisher A25741 Commercial assay or kit DIG RNA Labeling Kit (SP6/T7) Roche 11175025910 Commercial assay or kit NEBuilder HiFi DNA Assembly Master Mix New England Biolabs E2621 Commercial assay or kit In- Fusion HD Cloning Kit Takara 639648 Commercial assay or kit KOD -Plus- Mutagenesis Kit Toyobo SMK- 101 Software, algorithm MASCOT server Matrix science https://www. matrixscience.com/server. html RRID:SCR_014322 Software, algorithm ImageJ Schneider et al., 2012 https://imagej.nih.gov/ij/ Other DAPI solution DOJINDO Lot.PF082 340–07971 Other N- 2 Supplement Thermo Fisher 17502–048 Other B- 27 Supplement Thermo Fisher 17504–044 Other Neurobasal Medium Thermo Fisher 21103–049 Other Penicillin- Streptomycin Thermo Fisher 15070–063 Other HBSS (X10) Thermo Fisher 14185–052 Other HEPES (1 M) Thermo Fisher 15630–080 Other Papain Worthington Biochemical Corporation LK003178 Other Fast Green Wako 061–00031 Other Protease Inhibitor Cocktail Sigma P8340- 1ML Other Streptavidin Magnetic Beads Thermo Fisher 88817 Other Poly- L- Ornithine Solution Wako 163–27421 Other Skim Milk Powder Wako 190–12865 Other Immobilon Transfer Membrane PVDF Millipore IPVH00010 Other Immobilon Western Chemiluminescent Millipore WBKLS0500 Other Sodium Hyaluronate (M2) (Mw:600,000~1,120,000) PG Research NaHA- M2 Other Biotinylated Sodium Hyaluronate (M1) (Mw:600,000~1,120,000) PG Research BHHA- M1 Other Carboxyfluorescein diacetate succinimidyl ester DOJINDO 341–07401 Other GFP- Trap- Agarose Chromotek gta- 20 Other ELISA 96 well plate IWAKI 3801–096 Other BLOCK ACE Powder KAC UKB80 Other ELISA POD Substrate TMB Solution Nacalai 05299–54 Continued Continued on next page Mubuchi et al. eLife 2023;12:RP92342.

    Article Title: Electrically Conductive Injectable Silk/PEDOT: PSS Hydrogel for Enhanced Neural Network Formation.
    Article Snippet: The majority of cell culture reagents including neurobasal medium, DMEM/F- 12, fetal bovine serum (FBS), N- 2 supplement, MEM nonessential amino acids (NEAA), β- mercaptoethanol, B- 27 supplement, GlutaMAX, and penicillin–streptomycin (Pen- Strep) were acquired from Thermo Fisher Scientific.

    Article Title: A synthetic method to assay polycystin channel biophysics
    Article Snippet: Cells were centrifuged at 300 × g for 4 min and plated on polylysine- coated glass coverslip at 1–4 × 105 density in basal medium eagle solution containing B27 supplement (17504044, Gibco), N- 2 supplement (17502048, Gibco), 0.5% penicillin/streptomycin (15140148, Gibco), 5% fetal bovine serum, 5% horse serum (260500,Gibco), and GlutaMax (350500, Gibco).

    Migration:

    Article Title: GM-CSF is key in the efficacy of vaccine-induced reduction of Helicobacter pylori infection.
    Article Snippet: 2.11 | AKP cells co- culture with H. pylori AKP cells were cultured in collagen type I solution from rat tail (Sigma) pre- coated T flasks (Falcon) in Minigut medium composed of DMEM/ F12 (Gibco), 1% Penicillin/streptomycin, 1% N- 2 supplement (Gibco), 1% B- 27 supplement (Gibco), 10% FBS in a 37°C – 5% CO2 incubator.

    Article Title: Modulation of human dorsal root ganglion neuron firing by the Nav1.8 inhibitor suzetrigine.
    Article Snippet: Each well was then gently flooded with 1 mL of culture media consisting of BrainPhys media (Stemcell technologies, Cat. 05709), 1% penicillin/streptomycin, 1% GlutaMAX, 2% NeuroCult SM1 (Stemcell technologies, Cat 05711), 1% N- 2 Supplement (Thermo Scientific, Cat # 17502048), and 2% Fetal Bovine Serum.

    Article Title: Pharmacologically inducing regenerative cardiac cells by small molecule drugs
    Article Snippet: When the CMs recovered contraction, the culture medium was changed with chemically reprogramming medium (MCDB131 Gibco), 25 mg/l NaHCO3 (Sigma), 4 mM Glucose (Sigma), 1% Clutmine (Gibco), 1× N- 2 supplement (Gibco), and 20% 1× B- 27 supplement (Gibco), 10 μM CHIR99021 (Selleck), and 0.5 μM A- 485 (MCE).

    Article Title: Variant-specific effects of GBA1 mutations on dopaminergic neuron proteostasis.
    Article Snippet: Then, the media was changed to N2B27 neuronal cell culture medium composed of 49% Neurobasal medium (Life Technologies), 49% DMEM/F12 (Life Technologies), 1% Glutamax (Life Technologies), 1% penicillin–streptomycin (Capricorn), 1:100 B- 27 supplement (Thermo Fisher Scientific), and 1:200 N- 2 supplement (Thermo Fisher Scientific), with the addition of 150 μM ascorbic acid (Sigma- Aldrich).

    Article Title: High levels of chromosomal instability facilitate the tumor growth and sphere formation.
    Article Snippet: The HeLa Kyoto cell line is a popular subline of HeLa cells, a human cervical carcinoma- derived cell line, which is suitable for mitotic study due to its slow migration.24 In spheroid culture, cells were seeded to round- bottomed ultra- low attachment 96- well plates (Corning) at 1000 cells/well in renal epithelial cell growth basal medium (REBM) without FBS, and supplemented with B- 27 Supplement (Thermo Fisher Scientific), N- 2 Supplement (Thermo Fisher Scientific), and 10 μM ROCK inhibitor Y- 27632 (FUJIFILM Wako).

    Article Title: Assembly of neuron- and radial glial-cell-derived extracellular matrix molecules promotes radial migration of developing cortical neurons
    Article Snippet: DOI: https://doi.org/10.7554/eLife.92342 21 of 32 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Peptide, recombinant protein Recombinant Human Neurocan Protein R&D 6508- NC- 050 Peptide, recombinant protein Chondroitinase ABC Protease Free Seikagaku Corporation 100332 Commercial assay or kit BCA assay kit Thermo Fisher 23227 Commercial assay or kit RNeasy Mini Kit Qiagen 74104 Commercial assay or kit PowerUp SYBR Green Master Mix Thermo Fisher A25741 Commercial assay or kit DIG RNA Labeling Kit (SP6/T7) Roche 11175025910 Commercial assay or kit NEBuilder HiFi DNA Assembly Master Mix New England Biolabs E2621 Commercial assay or kit In- Fusion HD Cloning Kit Takara 639648 Commercial assay or kit KOD -Plus- Mutagenesis Kit Toyobo SMK- 101 Software, algorithm MASCOT server Matrix science https://www. matrixscience.com/server. html RRID:SCR_014322 Software, algorithm ImageJ Schneider et al., 2012 https://imagej.nih.gov/ij/ Other DAPI solution DOJINDO Lot.PF082 340–07971 Other N- 2 Supplement Thermo Fisher 17502–048 Other B- 27 Supplement Thermo Fisher 17504–044 Other Neurobasal Medium Thermo Fisher 21103–049 Other Penicillin- Streptomycin Thermo Fisher 15070–063 Other HBSS (X10) Thermo Fisher 14185–052 Other HEPES (1 M) Thermo Fisher 15630–080 Other Papain Worthington Biochemical Corporation LK003178 Other Fast Green Wako 061–00031 Other Protease Inhibitor Cocktail Sigma P8340- 1ML Other Streptavidin Magnetic Beads Thermo Fisher 88817 Other Poly- L- Ornithine Solution Wako 163–27421 Other Skim Milk Powder Wako 190–12865 Other Immobilon Transfer Membrane PVDF Millipore IPVH00010 Other Immobilon Western Chemiluminescent Millipore WBKLS0500 Other Sodium Hyaluronate (M2) (Mw:600,000~1,120,000) PG Research NaHA- M2 Other Biotinylated Sodium Hyaluronate (M1) (Mw:600,000~1,120,000) PG Research BHHA- M1 Other Carboxyfluorescein diacetate succinimidyl ester DOJINDO 341–07401 Other GFP- Trap- Agarose Chromotek gta- 20 Other ELISA 96 well plate IWAKI 3801–096 Other BLOCK ACE Powder KAC UKB80 Other ELISA POD Substrate TMB Solution Nacalai 05299–54 Continued Continued on next page Mubuchi et al. eLife 2023;12:RP92342.

    Article Title: Electrically Conductive Injectable Silk/PEDOT: PSS Hydrogel for Enhanced Neural Network Formation.
    Article Snippet: The majority of cell culture reagents including neurobasal medium, DMEM/F- 12, fetal bovine serum (FBS), N- 2 supplement, MEM nonessential amino acids (NEAA), β- mercaptoethanol, B- 27 supplement, GlutaMAX, and penicillin–streptomycin (Pen- Strep) were acquired from Thermo Fisher Scientific.

    Article Title: A synthetic method to assay polycystin channel biophysics
    Article Snippet: Cells were centrifuged at 300 × g for 4 min and plated on polylysine- coated glass coverslip at 1–4 × 105 density in basal medium eagle solution containing B27 supplement (17504044, Gibco), N- 2 supplement (17502048, Gibco), 0.5% penicillin/streptomycin (15140148, Gibco), 5% fetal bovine serum, 5% horse serum (260500,Gibco), and GlutaMax (350500, Gibco).

    Cell Culture:

    Article Title: GM-CSF is key in the efficacy of vaccine-induced reduction of Helicobacter pylori infection.
    Article Snippet: 2.11 | AKP cells co- culture with H. pylori AKP cells were cultured in collagen type I solution from rat tail (Sigma) pre- coated T flasks (Falcon) in Minigut medium composed of DMEM/ F12 (Gibco), 1% Penicillin/streptomycin, 1% N- 2 supplement (Gibco), 1% B- 27 supplement (Gibco), 10% FBS in a 37°C – 5% CO2 incubator.

    Article Title: Modulation of human dorsal root ganglion neuron firing by the Nav1.8 inhibitor suzetrigine.
    Article Snippet: Each well was then gently flooded with 1 mL of culture media consisting of BrainPhys media (Stemcell technologies, Cat. 05709), 1% penicillin/streptomycin, 1% GlutaMAX, 2% NeuroCult SM1 (Stemcell technologies, Cat 05711), 1% N- 2 Supplement (Thermo Scientific, Cat # 17502048), and 2% Fetal Bovine Serum.

    Article Title: Pharmacologically inducing regenerative cardiac cells by small molecule drugs
    Article Snippet: When the CMs recovered contraction, the culture medium was changed with chemically reprogramming medium (MCDB131 Gibco), 25 mg/l NaHCO3 (Sigma), 4 mM Glucose (Sigma), 1% Clutmine (Gibco), 1× N- 2 supplement (Gibco), and 20% 1× B- 27 supplement (Gibco), 10 μM CHIR99021 (Selleck), and 0.5 μM A- 485 (MCE).

    Article Title: Variant-specific effects of GBA1 mutations on dopaminergic neuron proteostasis.
    Article Snippet: Then, the media was changed to N2B27 neuronal cell culture medium composed of 49% Neurobasal medium (Life Technologies), 49% DMEM/F12 (Life Technologies), 1% Glutamax (Life Technologies), 1% penicillin–streptomycin (Capricorn), 1:100 B- 27 supplement (Thermo Fisher Scientific), and 1:200 N- 2 supplement (Thermo Fisher Scientific), with the addition of 150 μM ascorbic acid (Sigma- Aldrich).

    Article Title: High levels of chromosomal instability facilitate the tumor growth and sphere formation.
    Article Snippet: The HeLa Kyoto cell line is a popular subline of HeLa cells, a human cervical carcinoma- derived cell line, which is suitable for mitotic study due to its slow migration.24 In spheroid culture, cells were seeded to round- bottomed ultra- low attachment 96- well plates (Corning) at 1000 cells/well in renal epithelial cell growth basal medium (REBM) without FBS, and supplemented with B- 27 Supplement (Thermo Fisher Scientific), N- 2 Supplement (Thermo Fisher Scientific), and 10 μM ROCK inhibitor Y- 27632 (FUJIFILM Wako).

    Article Title: Assembly of neuron- and radial glial-cell-derived extracellular matrix molecules promotes radial migration of developing cortical neurons
    Article Snippet: DOI: https://doi.org/10.7554/eLife.92342 21 of 32 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Peptide, recombinant protein Recombinant Human Neurocan Protein R&D 6508- NC- 050 Peptide, recombinant protein Chondroitinase ABC Protease Free Seikagaku Corporation 100332 Commercial assay or kit BCA assay kit Thermo Fisher 23227 Commercial assay or kit RNeasy Mini Kit Qiagen 74104 Commercial assay or kit PowerUp SYBR Green Master Mix Thermo Fisher A25741 Commercial assay or kit DIG RNA Labeling Kit (SP6/T7) Roche 11175025910 Commercial assay or kit NEBuilder HiFi DNA Assembly Master Mix New England Biolabs E2621 Commercial assay or kit In- Fusion HD Cloning Kit Takara 639648 Commercial assay or kit KOD -Plus- Mutagenesis Kit Toyobo SMK- 101 Software, algorithm MASCOT server Matrix science https://www. matrixscience.com/server. html RRID:SCR_014322 Software, algorithm ImageJ Schneider et al., 2012 https://imagej.nih.gov/ij/ Other DAPI solution DOJINDO Lot.PF082 340–07971 Other N- 2 Supplement Thermo Fisher 17502–048 Other B- 27 Supplement Thermo Fisher 17504–044 Other Neurobasal Medium Thermo Fisher 21103–049 Other Penicillin- Streptomycin Thermo Fisher 15070–063 Other HBSS (X10) Thermo Fisher 14185–052 Other HEPES (1 M) Thermo Fisher 15630–080 Other Papain Worthington Biochemical Corporation LK003178 Other Fast Green Wako 061–00031 Other Protease Inhibitor Cocktail Sigma P8340- 1ML Other Streptavidin Magnetic Beads Thermo Fisher 88817 Other Poly- L- Ornithine Solution Wako 163–27421 Other Skim Milk Powder Wako 190–12865 Other Immobilon Transfer Membrane PVDF Millipore IPVH00010 Other Immobilon Western Chemiluminescent Millipore WBKLS0500 Other Sodium Hyaluronate (M2) (Mw:600,000~1,120,000) PG Research NaHA- M2 Other Biotinylated Sodium Hyaluronate (M1) (Mw:600,000~1,120,000) PG Research BHHA- M1 Other Carboxyfluorescein diacetate succinimidyl ester DOJINDO 341–07401 Other GFP- Trap- Agarose Chromotek gta- 20 Other ELISA 96 well plate IWAKI 3801–096 Other BLOCK ACE Powder KAC UKB80 Other ELISA POD Substrate TMB Solution Nacalai 05299–54 Continued Continued on next page Mubuchi et al. eLife 2023;12:RP92342.

    Article Title: Electrically Conductive Injectable Silk/PEDOT: PSS Hydrogel for Enhanced Neural Network Formation.
    Article Snippet: The majority of cell culture reagents including neurobasal medium, DMEM/F- 12, fetal bovine serum (FBS), N- 2 supplement, MEM nonessential amino acids (NEAA), β- mercaptoethanol, B- 27 supplement, GlutaMAX, and penicillin–streptomycin (Pen- Strep) were acquired from Thermo Fisher Scientific.

    Article Title: A synthetic method to assay polycystin channel biophysics
    Article Snippet: Cells were centrifuged at 300 × g for 4 min and plated on polylysine- coated glass coverslip at 1–4 × 105 density in basal medium eagle solution containing B27 supplement (17504044, Gibco), N- 2 supplement (17502048, Gibco), 0.5% penicillin/streptomycin (15140148, Gibco), 5% fetal bovine serum, 5% horse serum (260500,Gibco), and GlutaMax (350500, Gibco).

    Co-Culture Assay:

    Article Title: GM-CSF is key in the efficacy of vaccine-induced reduction of Helicobacter pylori infection.
    Article Snippet: 2.11 | AKP cells co- culture with H. pylori AKP cells were cultured in collagen type I solution from rat tail (Sigma) pre- coated T flasks (Falcon) in Minigut medium composed of DMEM/ F12 (Gibco), 1% Penicillin/streptomycin, 1% N- 2 supplement (Gibco), 1% B- 27 supplement (Gibco), 10% FBS in a 37°C – 5% CO2 incubator.

    Article Title: Modulation of human dorsal root ganglion neuron firing by the Nav1.8 inhibitor suzetrigine.
    Article Snippet: Each well was then gently flooded with 1 mL of culture media consisting of BrainPhys media (Stemcell technologies, Cat. 05709), 1% penicillin/streptomycin, 1% GlutaMAX, 2% NeuroCult SM1 (Stemcell technologies, Cat 05711), 1% N- 2 Supplement (Thermo Scientific, Cat # 17502048), and 2% Fetal Bovine Serum.

    Article Title: Pharmacologically inducing regenerative cardiac cells by small molecule drugs
    Article Snippet: When the CMs recovered contraction, the culture medium was changed with chemically reprogramming medium (MCDB131 Gibco), 25 mg/l NaHCO3 (Sigma), 4 mM Glucose (Sigma), 1% Clutmine (Gibco), 1× N- 2 supplement (Gibco), and 20% 1× B- 27 supplement (Gibco), 10 μM CHIR99021 (Selleck), and 0.5 μM A- 485 (MCE).

    Article Title: Variant-specific effects of GBA1 mutations on dopaminergic neuron proteostasis.
    Article Snippet: Then, the media was changed to N2B27 neuronal cell culture medium composed of 49% Neurobasal medium (Life Technologies), 49% DMEM/F12 (Life Technologies), 1% Glutamax (Life Technologies), 1% penicillin–streptomycin (Capricorn), 1:100 B- 27 supplement (Thermo Fisher Scientific), and 1:200 N- 2 supplement (Thermo Fisher Scientific), with the addition of 150 μM ascorbic acid (Sigma- Aldrich).

    Article Title: High levels of chromosomal instability facilitate the tumor growth and sphere formation.
    Article Snippet: The HeLa Kyoto cell line is a popular subline of HeLa cells, a human cervical carcinoma- derived cell line, which is suitable for mitotic study due to its slow migration.24 In spheroid culture, cells were seeded to round- bottomed ultra- low attachment 96- well plates (Corning) at 1000 cells/well in renal epithelial cell growth basal medium (REBM) without FBS, and supplemented with B- 27 Supplement (Thermo Fisher Scientific), N- 2 Supplement (Thermo Fisher Scientific), and 10 μM ROCK inhibitor Y- 27632 (FUJIFILM Wako).

    Article Title: Assembly of neuron- and radial glial-cell-derived extracellular matrix molecules promotes radial migration of developing cortical neurons
    Article Snippet: DOI: https://doi.org/10.7554/eLife.92342 21 of 32 Reagent type (species) or resource Designation Source or reference Identifiers Additional information Peptide, recombinant protein Recombinant Human Neurocan Protein R&D 6508- NC- 050 Peptide, recombinant protein Chondroitinase ABC Protease Free Seikagaku Corporation 100332 Commercial assay or kit BCA assay kit Thermo Fisher 23227 Commercial assay or kit RNeasy Mini Kit Qiagen 74104 Commercial assay or kit PowerUp SYBR Green Master Mix Thermo Fisher A25741 Commercial assay or kit DIG RNA Labeling Kit (SP6/T7) Roche 11175025910 Commercial assay or kit NEBuilder HiFi DNA Assembly Master Mix New England Biolabs E2621 Commercial assay or kit In- Fusion HD Cloning Kit Takara 639648 Commercial assay or kit KOD -Plus- Mutagenesis Kit Toyobo SMK- 101 Software, algorithm MASCOT server Matrix science https://www. matrixscience.com/server. html RRID:SCR_014322 Software, algorithm ImageJ Schneider et al., 2012 https://imagej.nih.gov/ij/ Other DAPI solution DOJINDO Lot.PF082 340–07971 Other N- 2 Supplement Thermo Fisher 17502–048 Other B- 27 Supplement Thermo Fisher 17504–044 Other Neurobasal Medium Thermo Fisher 21103–049 Other Penicillin- Streptomycin Thermo Fisher 15070–063 Other HBSS (X10) Thermo Fisher 14185–052 Other HEPES (1 M) Thermo Fisher 15630–080 Other Papain Worthington Biochemical Corporation LK003178 Other Fast Green Wako 061–00031 Other Protease Inhibitor Cocktail Sigma P8340- 1ML Other Streptavidin Magnetic Beads Thermo Fisher 88817 Other Poly- L- Ornithine Solution Wako 163–27421 Other Skim Milk Powder Wako 190–12865 Other Immobilon Transfer Membrane PVDF Millipore IPVH00010 Other Immobilon Western Chemiluminescent Millipore WBKLS0500 Other Sodium Hyaluronate (M2) (Mw:600,000~1,120,000) PG Research NaHA- M2 Other Biotinylated Sodium Hyaluronate (M1) (Mw:600,000~1,120,000) PG Research BHHA- M1 Other Carboxyfluorescein diacetate succinimidyl ester DOJINDO 341–07401 Other GFP- Trap- Agarose Chromotek gta- 20 Other ELISA 96 well plate IWAKI 3801–096 Other BLOCK ACE Powder KAC UKB80 Other ELISA POD Substrate TMB Solution Nacalai 05299–54 Continued Continued on next page Mubuchi et al. eLife 2023;12:RP92342.

    Article Title: Electrically Conductive Injectable Silk/PEDOT: PSS Hydrogel for Enhanced Neural Network Formation.
    Article Snippet: The majority of cell culture reagents including neurobasal medium, DMEM/F- 12, fetal bovine serum (FBS), N- 2 supplement, MEM nonessential amino acids (NEAA), β- mercaptoethanol, B- 27 supplement, GlutaMAX, and penicillin–streptomycin (Pen- Strep) were acquired from Thermo Fisher Scientific.

    Article Title: A synthetic method to assay polycystin channel biophysics
    Article Snippet: Cells were centrifuged at 300 × g for 4 min and plated on polylysine- coated glass coverslip at 1–4 × 105 density in basal medium eagle solution containing B27 supplement (17504044, Gibco), N- 2 supplement (17502048, Gibco), 0.5% penicillin/streptomycin (15140148, Gibco), 5% fetal bovine serum, 5% horse serum (260500,Gibco), and GlutaMax (350500, Gibco).



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